View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_4 (Length: 621)
Name: NF7721_high_4
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 1 - 603
Target Start/End: Complemental strand, 39536582 - 39535975
Alignment:
| Q |
1 |
caactggtatctctttttcagaatgattgccactatccatttccttaccacaatcttcgcagctaaaatattttccctttggcttagatcgaagagtgaa |
100 |
Q |
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| T |
39536582 |
caactggtatctctttttcagaatgattgccactatccattttcttaccacaatcttcgcagctaaaatattttccctttggcttagatcgaagagtgaa |
39536483 |
T |
|
| Q |
101 |
atcgtgcttcttaaaacaagtttccatagtatgaccacagtaaaattcaaacaaaattctaagaatcattaaccaaacttagtattgaaaaatcatgttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39536482 |
atcgtgcttcttaaaacaagtttccatagtatgaccacagtaaaattcaaacaaaattctaagaatcattaaccaaacttagtat-gaaaaatcatgttc |
39536384 |
T |
|
| Q |
201 |
ttaatgttgacagaagttgtttcaggactca--gaactttcatgtttaagctttacaaatgaaacccttccatctcttaaacatgtagctttctcaatat |
298 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39536383 |
ttaatgttgacagaagttgtttcaggactcatagaactttcatgtttaagctt-acaaatgaaacccttacatctcttaaacatgtagctttctcaatat |
39536285 |
T |
|
| Q |
299 |
tcaagtataaatctaagttatgttactctcccatgaaaggccaattatcaatcaaaaaatactccaaataaaaaacatcattcatttttgtcattctgtc |
398 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39536284 |
tcaagtataaatctaagttattttactctcccatgaaaggccaattatcaatcaaaaaatactccaaataaaaaacatcattcatttttgtcattctgtc |
39536185 |
T |
|
| Q |
399 |
aact-----agcaattgtaggaatgaaccaccaaatagataaaattaatttcatttccacgacaactccaacagaaggagttgacaaaaggatgaacatg |
493 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39536184 |
aactcaactagcaattgtaggaatgaaccaccaaatagataaaattaatttcatttccacaacaactccaacagaaggagttgacaaaaggatgaacatg |
39536085 |
T |
|
| Q |
494 |
acttgcataataataatttagtgaaactataaacaaacctataaaactatatgcagtttcgtcatcatctaaggtatatgtctcctccatgcattcatct |
593 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39536084 |
acttgcataataataatttagtgaaactataaacaaacctataaaactatatgcagtttcgtcatcatctaaggtatatgtctcctccatgcattcatct |
39535985 |
T |
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| Q |
594 |
ataacctgtg |
603 |
Q |
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| T |
39535984 |
ataacctgtg |
39535975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 2544323 - 2544359
Alignment:
| Q |
134 |
accacagtaaaattcaaacaaaattctaagaatcatt |
170 |
Q |
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| T |
2544323 |
accacagtaaaactcaaacaaaattctaagaatcatt |
2544359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 2361737 - 2361686
Alignment:
| Q |
72 |
tttccctttggcttagatcgaagagtgaaatcgtgcttcttaaaacaagttt |
123 |
Q |
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||||||||||||||||||||| ||| |||| | ||||||||||||| ||||| |
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| T |
2361737 |
tttccctttggcttagatcgaggagggaaaccatgcttcttaaaactagttt |
2361686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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