View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_40 (Length: 382)
Name: NF7721_high_40
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_40 |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 8 - 364
Target Start/End: Original strand, 9835748 - 9836104
Alignment:
| Q |
8 |
atggagttaaatatggcgctggaattggccctggagtttatgacattcactccccaagaataccaccaactgaagaaattgctgagaggatcaacaagat |
107 |
Q |
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| T |
9835748 |
atggagttaagtatggcgctggaattggccctggagtttatgacattcactccccaagaataccaccaactgaagaaattgctgagaggatcaacaagat |
9835847 |
T |
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| Q |
108 |
gcttgcagtgcttgagaaaaacgttttgtgggtcaatcccgattgtggtctcaaaactcgcaagtacaccgaggtgaacccagccctcactgccatggtt |
207 |
Q |
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| T |
9835848 |
gcttgcagtgcttgagaaaaacgttttgtgggtcaatcccgattgtggtctcaaaactcgcaagtacaccgaggtgaacccagccctcactgccatggtt |
9835947 |
T |
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| Q |
208 |
gaggccacaaaacgcatccgcaaccagcttgcaagtggaaagtaaatggtagtaattaagaaagtagaatccaagtaatcacacaatggttctacttggt |
307 |
Q |
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| T |
9835948 |
gaggccacaaaacgcatccgcaaccagcttgcaagtggaaagtaaatggtagtaattaagaaagtagaatccaagtaatcacacaatggttctgcttggt |
9836047 |
T |
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| Q |
308 |
tcacagagagtgcaattttttcgaattttcggttttgtttcaataaatgtgttgaat |
364 |
Q |
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| T |
9836048 |
tcacagagagtgcaattttttcgaattttcggttttgtttcaataaatgtgttgaat |
9836104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 33466629 - 33466453
Alignment:
| Q |
19 |
tatggcgctggaattggccctggagtttatgacattcactccccaagaataccaccaactgaagaaattgctgagaggatcaacaagatgcttgcagtgc |
118 |
Q |
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| T |
33466629 |
tatggtgctggaattggccctggtgtgtatgacatccactccccaagaatcccaccaaccgacgagatcgccgacaggatcaacaagatgcttgctgtcc |
33466530 |
T |
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| Q |
119 |
ttgagaaaaacgttttgtgggtcaatcccgattgtggtctcaaaactcgcaagtacaccgaggtgaacccagccctc |
195 |
Q |
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| T |
33466529 |
ttgagaagaacgttttgtgggtcaaccctgactgtgggctaaaaacccgtaagtacacagaggttaagcctgccctc |
33466453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 35948334 - 35948503
Alignment:
| Q |
13 |
gttaaatatggcgctggaattggccctggagtttatgacattcactccccaagaataccaccaactgaagaaattgctgagaggatcaacaagatgcttg |
112 |
Q |
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| T |
35948334 |
gttaaatatggtgctggcattggtcctggtgtttatgatattcactcaccaaggattccacccacagaagaaattgctgatagaatcaacaagatgcttg |
35948433 |
T |
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| Q |
113 |
cagtgcttgagaaaaacgttttgtgggtcaatcccgattgtggtctcaaaactcgcaagtacaccgaggt |
182 |
Q |
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| T |
35948434 |
ctgttcttgaaagcaacatcctttgggtcaacccagattgtggtcttaaaacgcgaaaatacactgaggt |
35948503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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