View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_41 (Length: 379)
Name: NF7721_high_41
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_41 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 1521537 - 1521189
Alignment:
| Q |
18 |
aaaaattgggatattcaatcaatcctttagcgagaatatatacaagctgtcctatttcgcacatatagagtacaaatcaagtaaccattctgcttcttta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1521537 |
aaaaattgggatattcaatcaatcctttagcgagaatatatacaagctgtcctatttcgcacatatagagtacaaatcaagtaaccattctgcttcttta |
1521438 |
T |
|
| Q |
118 |
tgaaatatctgtcaaccttgacatgctaagttcaatcacgctgaattggattgtgtgctgagctgttttcttatttattttctcattagagcttcatagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1521437 |
tgaaatatctgtcaaccttgacatgctaagttcaatcacgctgaattggattgtgtgctgagctgttttcttatttattttctcattagagcttcatagt |
1521338 |
T |
|
| Q |
218 |
ccttcccattttatcttcaaatcttctaaaataatctcaagtcaaagtagttgcacaattcctataatcttaattaaacatcaactttttctttataaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1521337 |
ccttcccattttatcttcaaatcttctaaaataatctcaagtcaaagtagttgcacaattcctataatcttaattaaacatcaactttttctttataaaa |
1521238 |
T |
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| Q |
318 |
gaaaatagttgcacaaaatcattttgcgctcattatttaggttctgttc |
366 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1521237 |
gaaagtagttgcacaaaatcattttgcgctcattatttaggttctgttc |
1521189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 2913373 - 2913125
Alignment:
| Q |
18 |
aaaaattgggatattcaatcaatcctttagcgagaatatatacaagctgtcctatttcgcacatatagagtacaaatcaagtaaccattctgcttcttta |
117 |
Q |
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||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2913373 |
aaaaattaggatattcaatcaatcctttcgtgagaatatatacaagctgtcctatttcgcacatatagagtacaaatcaagtaaccaatctgcttcttta |
2913274 |
T |
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| Q |
118 |
tgaaatatctgtcaaccttgacatgctaagttcaatcacgctgaattggattgtgtgctgagctgttttcttatttattttctcattagagcttcatagt |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || |||||||||| ||| |
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| T |
2913273 |
tgaaatatctgtcaaccttgacatgcttagttcaatcatgctgaattggattgtgtactgagctgttttcttatttattttcccagtagagcttcacagt |
2913174 |
T |
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| Q |
218 |
ccttcccattttatcttcaaatcttctaaaataatctcaagtcaaagta |
266 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2913173 |
ccttcccattttatcttcaaatcttttaaaataatctcaagtcaaagta |
2913125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 366
Target Start/End: Complemental strand, 2913091 - 2912998
Alignment:
| Q |
273 |
caattcctataatcttaattaaacatcaactttttctttataaaagaaaatagttgcacaaaatcattttgcgctcattatttaggttctgttc |
366 |
Q |
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|||||| || |||||||||| |||||||| ||| ||||||||||||||| |||| ||| ||||||||||||| || ||||||||||||||||| |
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| T |
2913091 |
caattcttacaatcttaattcaacatcaattttgtctttataaaagaaagtagtggcatgaaatcattttgcgttctttatttaggttctgttc |
2912998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 12171811 - 12171745
Alignment:
| Q |
204 |
tagagcttcatag-tccttcccattttatcttcaaatcttctaaaataatctcaagtcaaagtagtt |
269 |
Q |
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|||| |||||||| ||| ||| |||||||||||||||||||||||||||| | || |||||||||| |
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| T |
12171811 |
tagaacttcataggtccatccaattttatcttcaaatcttctaaaataatttgcagccaaagtagtt |
12171745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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