View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_42 (Length: 378)
Name: NF7721_high_42
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 5232871 - 5232512
Alignment:
| Q |
1 |
ataaaatgccttagatttcatgaaaatgcagatggtcatatgtaacattgacaaagttgtagcatttttagtacaaatattcttaccttgtaccatgtca |
100 |
Q |
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| T |
5232871 |
ataaaatggctcagatttcatgaaaatgtagatggtcatatgtaacatcgacaaagttgtagcatttttagtacaaatattcttaccttgtaccatgtca |
5232772 |
T |
|
| Q |
101 |
aaggttgttttttagccaatgatgatccttgtgtccaatcaatggaggaacttccagttatggtatgaaggctcaaggattcaccttttagtccaaccta |
200 |
Q |
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| T |
5232771 |
aaggttgttttttagccaatgatgatccttgtgtccaatcaatggaggaacttccagttatggtatgaaggctcaatgattcaccttttagtccaaccta |
5232672 |
T |
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| Q |
201 |
tccaaccacataaaatttgtctcaacaatgtacataataataaaattttgacttaaatatgattttaatctctataaatactaagatttgtatttcaatg |
300 |
Q |
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| T |
5232671 |
tccaacaacataaaatttgtctcaacaatgtacataataataaaattttgacttaaatatgattttaatctctataaatactaagatttgtatttcaatg |
5232572 |
T |
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| Q |
301 |
ttactagcatgcaaatgaatatgcaatatatcaaaccttgtaagaccacttctgccaaga |
360 |
Q |
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| T |
5232571 |
ttactagcatgcaaatgaatatgcaatatatcaaaccttgtaagaccatttctgccaaga |
5232512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 17128715 - 17128598
Alignment:
| Q |
79 |
attcttaccttgtaccatgtcaaaggttgttttttagccaatgatgatccttgtgtccaatcaatggaggaacttccagttatggtatgaaggctcaagg |
178 |
Q |
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| T |
17128715 |
attcttaccttgtaccatgtcaaaggttgttttttagataaaaatgatccttgtgtccatttaacagaagaacttccacttgtggtatgaaggtttaagg |
17128616 |
T |
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| Q |
179 |
attcaccttttagtccaa |
196 |
Q |
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| T |
17128615 |
attcacctttcagtccaa |
17128598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 52547029 - 52547077
Alignment:
| Q |
84 |
taccttgtaccatgtcaaaggttgttttttagccaatgatgatccttgt |
132 |
Q |
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| T |
52547029 |
taccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgt |
52547077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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