View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_43 (Length: 376)
Name: NF7721_high_43
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_43 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 9824861 - 9825212
Alignment:
| Q |
1 |
acacagttttttcagagtgaataataacttattaataagatcttacgtattgcatttttgagccttcctaactttgacataaaatggaccaactaaacaa |
100 |
Q |
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| T |
9824861 |
acacagttttttcagagtgaataataacttattaataagatcttacgaattgcatttttgagccttcctaactttgacataaaatggaccaactaaacaa |
9824960 |
T |
|
| Q |
101 |
atcggtataaggatatagagattagtaataaacacaacaatttaacaacgatcgtgttaagttaccatctatgaagcaaggaaacagacacggataccag |
200 |
Q |
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| T |
9824961 |
atcggtataaggatatagagattagtaataaacacaacaatttaacaacgatcgtgttaagttaccatctatgaagcaaggacacagacacggataccag |
9825060 |
T |
|
| Q |
201 |
acacgacaaagacacaaaataatttaagaaaataacatacttaatgtaatcataggtgtcggtctaggacaccgacacatgtccgacatcgagacacacc |
300 |
Q |
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| T |
9825061 |
acacgacaaagacacaaaataatttaagaaaataacatacttaatgtaatcataggtgtcggtctaggacaccgacacatgtccgacatcgcgacacacc |
9825160 |
T |
|
| Q |
301 |
tagttgaccgagtgtccttgcttcacaggttaccattgattagaaaaaatac |
352 |
Q |
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| T |
9825161 |
tagttgaccgagtgtccttgcttcacaggttaccattgattagaaaaaatac |
9825212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 426631 - 426590
Alignment:
| Q |
167 |
atctatgaagcaaggaaacagacacggataccagacacgaca |
208 |
Q |
| |
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|
| T |
426631 |
atctatgaagcatggatacagacacggataccggacacgaca |
426590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 52369731 - 52369828
Alignment:
| Q |
161 |
gttaccatctatgaagcaaggaaacagacacggataccagacacgacaaagacacaaaataatttaagaaaataacatactt-aatgtaatcataggtgt |
259 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| ||| ||||||||| | | |||||||| ||||||| ||||| || ||||||||||||||||| |
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|
| T |
52369731 |
gttaccatctatgaagcacggacacagacacggacaccggacacgacatgg----ataataatttgagaaaattacataattcaatgtaatcataggtgt |
52369826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 45451562 - 45451642
Alignment:
| Q |
218 |
aataatttaagaaaataacatacttaa-tgtaatcataggtgtcggtctaggacaccgacacatgtccgacatcgagacaca |
298 |
Q |
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| T |
45451562 |
aataatttgagaaaatcacatacttcagtataataatatgtgtcggtgtcggacac-gacacatgtccgacaccgagacaca |
45451642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 47989442 - 47989488
Alignment:
| Q |
169 |
ctatgaagcaaggaaacagacacggataccagacacgacaaagacac |
215 |
Q |
| |
|
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|
| T |
47989442 |
ctatgaagcatggatacagacacggataccagacacgacacagacac |
47989488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 40774223 - 40774264
Alignment:
| Q |
167 |
atctatgaagcaaggaaacagacacggataccagacacgaca |
208 |
Q |
| |
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|
| T |
40774223 |
atctatgaaacacggatacagacacggataccagacacgaca |
40774264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 18607147 - 18607103
Alignment:
| Q |
218 |
aataatttaagaaaataacatactt-aatgtaatcataggtgtcg |
261 |
Q |
| |
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|||||||| ||||||||||||| || ||||||||||||||||||| |
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| T |
18607147 |
aataatttgagaaaataacataattcaatgtaatcataggtgtcg |
18607103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 302
Target Start/End: Original strand, 19980740 - 19980768
Alignment:
| Q |
274 |
gacacatgtccgacatcgagacacaccta |
302 |
Q |
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| T |
19980740 |
gacacatgtccgacatcgagacacaccta |
19980768 |
T |
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