View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_45 (Length: 365)
Name: NF7721_high_45
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 340
Target Start/End: Original strand, 6699815 - 6700142
Alignment:
| Q |
14 |
agatgaattggtggaggatttagttactcaaatgtcctattcaacaccaatttattagtgaatttatgtagcatactttatttcgatgtatatttggtat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6699815 |
agatgaattggtggaggatttagttactcaaatgtcctattcagcaccaatttattagtgaatttatgtagcatactttgtttcgatgtatatttggtat |
6699914 |
T |
|
| Q |
114 |
agtgtccttgacaaatgataaacaaaattcaactctaaatctttctactg-ttttagattagaatgaatgaaggattacaattatgcacctaatttgcat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
6699915 |
agtgtccttgacaaatgataaacaaaattcaactctaaatctttctactggttttagattagaatgaatgaaggcttgcaattatgcacctaatttgcat |
6700014 |
T |
|
| Q |
213 |
tgataaatatcagttatccaaatattatgacagaaaataaactgtaagcaatatgtacatgtggtataacttacctctcttttgaaggaattaaattcaa |
312 |
Q |
| |
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|||||||||||||| |||| |||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6700015 |
tgataaatatcagtcatcccaatattataacagaatataaagtgtaagcaatatgtacatgtggtataacttacctctcttttgaaggaattaacttcaa |
6700114 |
T |
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| Q |
313 |
cttgctccattcaaagagatataatgtg |
340 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
6700115 |
cttgctccattcaaagagatataatgtg |
6700142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 347
Target Start/End: Complemental strand, 20914132 - 20913798
Alignment:
| Q |
14 |
agatgaattggtggaggatttagttactcaaatgtcctattcaacaccaatttattagtgaatttatgtagcatactttatttcgatgtatatttggtat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20914132 |
agatgaattggtggaggatttagttactcaaatgtcctattcagcaccaatttattagtgaatttatgtagcatacttcgtttcgatgtatatttggtat |
20914033 |
T |
|
| Q |
114 |
agtgtccttgacaaatgataaacaaaattcaactctaaatctttctactg-ttttagattagaatgaatgaaggattacaattatgcacctaatttgcat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
20914032 |
agtgtccttgacaaatgataaacaaaattcaactctaaatctttctactggttttatattagaatgaacgaaggattacaattatgcacctaatttgcat |
20913933 |
T |
|
| Q |
213 |
tgataaatatcagttatccaaatattatgacagaaaataaactgtaagcaatatgtacatgtggtataacttacctctcttttgaaggaattaaattcaa |
312 |
Q |
| |
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|||||||||||||| |||| ||||| ||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| |
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| T |
20913932 |
tgataaatatcagtcatcccaatatgatgacagaagataaagtgtaagcaatatgtacatgtcgtaaaacttacctctcttttgaaggaattaacttcaa |
20913833 |
T |
|
| Q |
313 |
cttgctccattcaaagagatataatgtgtacaaaa |
347 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
20913832 |
cttgctccattcaaagagatataatgtgtacaaaa |
20913798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 21137756 - 21137695
Alignment:
| Q |
41 |
tcaaatgtcctattcaacaccaatttattagtgaatttatgtagcatactttatttcgatgt |
102 |
Q |
| |
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||||||||| |||||| ||||||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
21137756 |
tcaaatgtcttattcagttccaatttattaatgaatttatgtagcatactttgtttcgatgt |
21137695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 60 - 204
Target Start/End: Original strand, 2303734 - 2303878
Alignment:
| Q |
60 |
ccaatttattagtgaatttatgtagcatactttatttcgatgtatatttggtatagtgtccttgacaaatgataaacaaaattcaactctaaatctttct |
159 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| |||||||||||| ||||| ||||||||||||| | |
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| T |
2303734 |
ccaatttattagtgaatttatgtagcatactttgtttcgatgtatatttggtataatgtacttgaaaaatgataaacagaattcgactctaaatcttt-t |
2303832 |
T |
|
| Q |
160 |
act-gttttagattagaatgaatgaaggattacaattatgcaccta |
204 |
Q |
| |
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|| ||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
2303833 |
gctggttttagattagaatgaatgaaggattgcaattatgcaccta |
2303878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 170 - 341
Target Start/End: Original strand, 25533843 - 25534015
Alignment:
| Q |
170 |
attagaatgaatgaaggattacaattatgcacctaatttgcattgataaatatcagttatccaaatattatgacagaaaataaactgtaagcaatatgta |
269 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||||||| ||||||||||| |||| ||||||||||||||| ||| | ||||||| | || | |
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| T |
25533843 |
attagaatgaatgaaggattgcaattatgggcttaatttgcattggtaaatatcagtcatcccaatattatgacagaagatagagggtaagcattctgaa |
25533942 |
T |
|
| Q |
270 |
catgtggtataacttacctctcttttgaaggaattaaattcaacttgctccattcaaaga-gatataatgtgt |
341 |
Q |
| |
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|| ||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
25533943 |
cacgtggtataatttacctctctttggaaggaattaacttcaacttgctccattcaaagaggatataatgtgt |
25534015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 25532990 - 25533091
Alignment:
| Q |
59 |
accaatttattagtgaatttatgtagcatactttatttcgatgtatatttggtatagtgtccttgacaaatgataaacaaaattcaactctaaatctttc |
158 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
25532990 |
accattttattagtgaatttatgtagcatactttgtttcgatgtatctttggtatagtgtccttgacaaatgataaacaaaattaaacttcaaatctttc |
25533089 |
T |
|
| Q |
159 |
ta |
160 |
Q |
| |
|
|| |
|
|
| T |
25533090 |
ta |
25533091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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