View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7721_high_46 (Length: 358)

Name: NF7721_high_46
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7721_high_46
NF7721_high_46
[»] chr4 (5 HSPs)
chr4 (18-281)||(32526693-32526957)
chr4 (76-145)||(32527490-32527559)
chr4 (220-277)||(6892733-6892790)
chr4 (222-268)||(37243762-37243808)
chr4 (229-263)||(55548863-55548897)
[»] chr1 (7 HSPs)
chr1 (18-145)||(13263777-13263904)
chr1 (18-143)||(29255296-29255422)
chr1 (33-145)||(9981375-9981488)
chr1 (28-145)||(29254691-29254810)
chr1 (76-117)||(13264431-13264472)
chr1 (76-145)||(6631356-6631425)
chr1 (229-278)||(39737637-39737686)
[»] chr2 (2 HSPs)
chr2 (18-141)||(30617438-30617562)
chr2 (76-145)||(41320049-41320118)
[»] chr5 (4 HSPs)
chr5 (218-275)||(15531249-15531306)
chr5 (229-275)||(41237391-41237437)
chr5 (229-275)||(14830938-14830984)
chr5 (229-275)||(35319638-35319684)
[»] scaffold0330 (1 HSPs)
scaffold0330 (229-275)||(10688-10734)
[»] chr8 (3 HSPs)
chr8 (229-275)||(25107112-25107158)
chr8 (229-278)||(2374612-2374661)
chr8 (229-265)||(7745267-7745303)
[»] chr7 (3 HSPs)
chr7 (229-278)||(5034404-5034453)
chr7 (218-275)||(32555189-32555246)
chr7 (219-275)||(28031698-28031754)
[»] chr3 (1 HSPs)
chr3 (76-145)||(52362680-52362749)
[»] chr6 (1 HSPs)
chr6 (220-260)||(2804203-2804243)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 32526957 - 32526693
Alignment:
Q  18 taattaaggaagaataattggagaaagtctttatttggatggagatccaaaa-gaggtaacatgattaacatttaaaactatcattcaagccgttagatt 116  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  32526957 taattaagggagaataattggagaaagtctttatttggatggagatccaaaaagaggtcacatgattaacatttaaaactatcattcaagccgttagatt 32526858  T
Q  117 aaaatattatgaaagattgtgatttggaggatgcctttgcacctagtgatgggaatacgctagacaggcctagagaggtctaaaacttagcctatgacta 216  Q
    ||||||  ||||||| |||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32526857 aaaatacaatgaaaggttgtgatttggaggatgcctttgcacattgtgatgggaatacgctagaccggcctagagaggtctaaaacttagcctatgacta 32526758  T
Q  217 atcagaccataattttttcttaaatagagaatgcttagacttttttataagcttatttaactaaa 281  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32526757 atcagaccatacttttttcttaaatagagaatgcttagacttttttataagcttatttaactaaa 32526693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 32527490 - 32527559
Alignment:
Q  76 acatgattaacatttaaaactatcattcaagccgttagattaaaatattatgaaagattgtgatttggag 145  Q
    |||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  32527490 acatgattaacaattaagactatcattcaagctgttagattaaaatataatgaaaggttgtgatttggag 32527559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 6892733 - 6892790
Alignment:
Q  220 agaccataattttttcttaaatagagaatgcttagacttttttataagcttatttaac 277  Q
    |||||| | |||||||||||| ||||||||| |||||||||||| |||| ||||||||    
T  6892733 agaccagacttttttcttaaacagagaatgcctagacttttttagaagcctatttaac 6892790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 37243762 - 37243808
Alignment:
Q  222 accataattttttcttaaatagagaatgcttagacttttttataagc 268  Q
    |||||| |||||||||||||||||| ||| |||||||||||| ||||    
T  37243762 accatacttttttcttaaatagagattgcatagacttttttagaagc 37243808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 263
Target Start/End: Complemental strand, 55548897 - 55548863
Alignment:
Q  229 ttttttcttaaatagagaatgcttagactttttta 263  Q
    ||||||||||||||| |||||||||||||||||||    
T  55548897 ttttttcttaaatagtgaatgcttagactttttta 55548863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 13263904 - 13263777
Alignment:
Q  18 taattaaggaagaataattggagaaagtctttatttggatggagatccaaaagaggtaacatgattaacatttaaaactatcattcaagccgttagatta 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| | |||||||||||    
T  13263904 taattaagggagaataattggagaaagtctttatttggatggagatcaaaaagaggtcacatgattaacatttaaaactatcattcgaaccgttagatta 13263805  T
Q  118 aaatattatgaaagattgtgatttggag 145  Q
    |||||  ||||||| |||||||||||||    
T  13263804 aaatacaatgaaaggttgtgatttggag 13263777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 29255296 - 29255422
Alignment:
Q  18 taattaaggaagaataattggagaaagtctttatttggatggagatccaaaa-gaggtaacatgattaacatttaaaactatcattcaagccgttagatt 116  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| |||||||    
T  29255296 taattaagggagaataattggagaatgtctttatttggatggagatccaaaaagaggtcatatgattaacatttaaaactatcattcaagccattagatt 29255395  T
Q  117 aaaatattatgaaagattgtgatttgg 143  Q
    ||||||  ||||||| |||||||||||    
T  29255396 aaaatacaatgaaaggttgtgatttgg 29255422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 9981375 - 9981488
Alignment:
Q  33 aattggagaaagtctttatttggatggagatccaaaa-gaggtaacatgattaacatttaaaactatcattcaagccgttagattaaaatattatgaaag 131  Q
    |||||||||||||||||||  |||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||| |||||||||||||||  |||||||    
T  9981375 aattggagaaagtctttatcaggatggagatccaaaaagaggtcacatgtttaacatttaaaattatcattcaagtcgttagattaaaatacaatgaaag 9981474  T
Q  132 attgtgatttggag 145  Q
     |||||||||||||    
T  9981475 gttgtgatttggag 9981488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 29254810 - 29254691
Alignment:
Q  28 agaataattggagaaagtctttatttggatggagatccaaaa-gagg-taacatgattaacatttaaaactatcattcaagccgttagattaaaatatta 125  Q
    ||||||||  |||||||| |||||  ||| |||||| ||||| |||| | |||||||||||| |||| |||||||||||||||||||||||||||||| |    
T  29254810 agaataatcagagaaagtatttatgaggaaggagattcaaaaagagggtcacatgattaacaattaagactatcattcaagccgttagattaaaatataa 29254711  T
Q  126 tgaaagattgtgatttggag 145  Q
    |||||| || ||||||||||    
T  29254710 tgaaaggttatgatttggag 29254691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 13264431 - 13264472
Alignment:
Q  76 acatgattaacatttaaaactatcattcaagccgttagatta 117  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  13264431 acatgattaacaattaagactatcattcaagccgttagatta 13264472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 6631425 - 6631356
Alignment:
Q  76 acatgattaacatttaaaactatcattcaagccgttagattaaaatattatgaaagattgtgatttggag 145  Q
    |||||||||||| ||||||||  |||| ||||| |||||||||||||  ||||||| | | |||||||||    
T  6631425 acatgattaacaattaaaactcacatttaagccattagattaaaataagatgaaaggtggagatttggag 6631356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 39737686 - 39737637
Alignment:
Q  229 ttttttcttaaatagagaatgcttagacttttttataagcttatttaact 278  Q
    ||||||||||||||||||| || ||| |||||||| |||| |||||||||    
T  39737686 ttttttcttaaatagagaaggcctaggcttttttaaaagcctatttaact 39737637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 30617562 - 30617438
Alignment:
Q  18 taattaaggaagaataattggagaaagtctttatttggatggagatccaaaa-gaggtaacatgattaacatttaaaactatcattcaagccgttagatt 116  Q
    ||||||||| |||||||||||||||||||||| | ||||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||| ||||||||    
T  30617562 taattaagggagaataattggagaaagtctttgtgtggatggagatccaaaaagaggtcacatggttaatatttaaaactatcattcaagctgttagatt 30617463  T
Q  117 aaaatattatgaaagattgtgattt 141  Q
    ||||||  ||||||| |||||||||    
T  30617462 aaaatacaatgaaaggttgtgattt 30617438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 41320118 - 41320049
Alignment:
Q  76 acatgattaacatttaaaactatcattcaagccgttagattaaaatattatgaaagattgtgatttggag 145  Q
    |||||||||||| ||||||||  |||| ||||| |||||||||||||  ||||||| | | |||||||||    
T  41320118 acatgattaacaattaaaactcacatttaagccattagattaaaataagatgaaaggtggagatttggag 41320049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 15531306 - 15531249
Alignment:
Q  218 tcagaccataattttttcttaaatagagaatgcttagacttttttataagcttattta 275  Q
    |||||||| | |||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  15531306 tcagaccagacttttttcttaaatagagaatgcatagacttttttttaagcctattta 15531249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 41237437 - 41237391
Alignment:
Q  229 ttttttcttaaatagagaatgcttagacttttttataagcttattta 275  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||||    
T  41237437 ttttttcttaaatagagaatacttagtcttttttagaagcttattta 41237391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 14830984 - 14830938
Alignment:
Q  229 ttttttcttaaatagagaatgcttagacttttttataagcttattta 275  Q
    |||||||| |||||||||| |||||||||||||| |||| |||||||    
T  14830984 ttttttctaaaatagagaaggcttagacttttttttaagtttattta 14830938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 35319684 - 35319638
Alignment:
Q  229 ttttttcttaaatagagaatgcttagacttttttataagcttattta 275  Q
    ||||||||||||||||||| || |||||||||||| |||| ||||||    
T  35319684 ttttttcttaaatagagaaggcctagacttttttagaagcatattta 35319638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 10688 - 10734
Alignment:
Q  229 ttttttcttaaatagagaatgcttagacttttttataagcttattta 275  Q
    ||||||||||||||||||| |||||| |||||||| |||||||||||    
T  10688 ttttttcttaaatagagaaggcttaggcttttttagaagcttattta 10734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 25107112 - 25107158
Alignment:
Q  229 ttttttcttaaatagagaatgcttagacttttttataagcttattta 275  Q
    ||||||||||||||||||| |||||| |||||||| |||||||||||    
T  25107112 ttttttcttaaatagagaaggcttaggcttttttagaagcttattta 25107158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 2374661 - 2374612
Alignment:
Q  229 ttttttcttaaatagagaatgcttagacttttttataagcttatttaact 278  Q
    ||||||||||||||||||| |||||| ||||||| ||||| |||||||||    
T  2374661 ttttttcttaaatagagaaagcttaggcttttttttaagcctatttaact 2374612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 7745303 - 7745267
Alignment:
Q  229 ttttttcttaaatagagaatgcttagacttttttata 265  Q
    |||||||||||||||| || |||||||||||||||||    
T  7745303 ttttttcttaaatagataaagcttagacttttttata 7745267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 5034453 - 5034404
Alignment:
Q  229 ttttttcttaaatagagaatgcttagacttttttataagcttatttaact 278  Q
    ||||||||||||||||||| || ||| |||||||| |||| |||||||||    
T  5034453 ttttttcttaaatagagaaggcataggcttttttagaagcctatttaact 5034404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 32555189 - 32555246
Alignment:
Q  218 tcagaccataattttttcttaaatagagaatgcttagacttttttataagcttattta 275  Q
    |||||||| | ||||||||||||||||||| || ||| |||||||| |||| ||||||    
T  32555189 tcagaccagacttttttcttaaatagagaaggcctaggcttttttagaagcctattta 32555246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 28031698 - 28031754
Alignment:
Q  219 cagaccataattttttcttaaatagagaatgcttagacttttttataagcttattta 275  Q
    ||||||||| ||||||||||||||||||| |  ||| |||||||| |||| ||||||    
T  28031698 cagaccatacttttttcttaaatagagaaggtctaggcttttttagaagcctattta 28031754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 52362749 - 52362680
Alignment:
Q  76 acatgattaacatttaaaactatcattcaagccgttagattaaaatattatgaaagattgtgatttggag 145  Q
    |||||||||||| ||||||||  |||| ||||| |||||||||||||  ||||||| | | |||||||||    
T  52362749 acatgattaacaattaaaactcacatttaagccattagattaaaataagatgaaaggtggagatttggag 52362680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 2804243 - 2804203
Alignment:
Q  220 agaccataattttttcttaaatagagaatgcttagactttt 260  Q
    |||||| ||||||||||||||||||||||| || |||||||    
T  2804243 agaccacaattttttcttaaatagagaatgatttgactttt 2804203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University