View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_58 (Length: 308)
Name: NF7721_high_58
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_58 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 45645813 - 45646101
Alignment:
| Q |
1 |
tgtttttgaaatagtaatatttcgtcaattgacattagatgggtgtcttggcatccaacaagagagaattgctttgttctaaacgtggatggaagttgcc |
100 |
Q |
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| T |
45645813 |
tgtttttgaaatagtaatatttcgcgaattgacattagatgggtgtcttggcatccaacaagagagaattgctttgttccaaacgtggatggaagttgcc |
45645912 |
T |
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| Q |
101 |
ttggcaactgtagagttggagctagtgatttaattagaagatgggatggtaattaggtaact-ggttaacagctttcttgatattttacataatacttat |
199 |
Q |
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| T |
45645913 |
ttggcgactgtagagttggagctagtgatttaattagaagatgcgatggtaattaggtaactgggttaacagctttcttgatattgtacataatacttat |
45646012 |
T |
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| Q |
200 |
gcggaactgatggcattgttttttggtctgaagcttgttaataatatcggttgcaatcgagtttgttcctattaagaatcgaaaactat |
288 |
Q |
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| T |
45646013 |
gcggaactgatggcattgtttcttggtctgaagcttgttaataatatcggttgcaatcaagtttgttcctattaagaatcgaaaactat |
45646101 |
T |
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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 288
Target Start/End: Original strand, 34721349 - 34721425
Alignment:
| Q |
212 |
gcattgttttttggtctgaagcttgttaataatatcggttgcaatcgagtttgttcctattaagaatcgaaaactat |
288 |
Q |
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| T |
34721349 |
gcattgttttttggtttgaagcttgctaataatatgggttgcaatcaagtttgttgctattcagactcgaaaactat |
34721425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 51918598 - 51918706
Alignment:
| Q |
56 |
caacaagagagaattgctttgttctaaacgtggatggaagttgccttggcaactgtagagttggagctagtgatttaattagaagatgggatggtaatta |
155 |
Q |
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| T |
51918598 |
caacaagagatgattgttttgttcttaacgtggacggaagctgccttggtgacggtagagctggagctggtggtttaattagaagaggggatggtagttg |
51918697 |
T |
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| Q |
156 |
ggtaactgg |
164 |
Q |
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| T |
51918698 |
gataactgg |
51918706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 288
Target Start/End: Original strand, 19998270 - 19998369
Alignment:
| Q |
189 |
ataatacttatgcggaactgatggcattgttttttggtctgaagcttgttaataatatcggttgcaatcgagtttgttcctattaagaatcgaaaactat |
288 |
Q |
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| T |
19998270 |
ataatacttatgcggagcttatggcattgtttctttttctgaagcttgctaagaatattggttgcaatcaaatttgttgccattcagactcaaaaactat |
19998369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 1515401 - 1515344
Alignment:
| Q |
1 |
tgtttttgaaatagtaatatttcgtcaattgacattagatgggtgtcttggcatccaa |
58 |
Q |
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||||||| ||| | |||||| ||| ||||||||||||||| ||||||||||||||||| |
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| T |
1515401 |
tgtttttcaaacaataatatctcgccaattgacattagataggtgtcttggcatccaa |
1515344 |
T |
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