View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7721_high_60 (Length: 305)
Name: NF7721_high_60
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_60 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 29103645 - 29103357
Alignment:
| Q |
20 |
cggaaaacacaaaatgtgtgacttctaactcatatttgatacacaactttctacatttttt--ggatagaaaatggaacacgagcactattcaacgaaca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29103645 |
cggaaaacacaaaatgtgtgacttctaactcatatttgatacacaactttctacattttttttggatagaaaatggaacacgagcactattcaacgaaca |
29103546 |
T |
|
| Q |
118 |
ccnnnnnnnn--ctattgaaaaggtcactcaacctagtacatacaatttgct-acta-atgtagtataaaatcaaacataaaattaaa-gaaatgaaaga |
212 |
Q |
| |
|
|| ||||||||||||||||||||||||||| | | ||| || | ||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
29103545 |
ccaaaaaaaaaactattgaaaaggtcactcaacctagta-acaaaatagaaagacaacatgtagtataaaatcaaacataaaactaaaagaaatgaaaga |
29103447 |
T |
|
| Q |
213 |
caacataacatttaaatagagtaattctcgttcttgttgaagtcattttttggtatttttactagcttgtcttctggttcttctcactcg |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
29103446 |
caacataacatttaaatagagtaattctcgttcttgttgtagtcattttttggtatttttactagcttgtcttctggctcttctctctcg |
29103357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University