View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7721_high_71 (Length: 266)

Name: NF7721_high_71
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7721_high_71
NF7721_high_71
[»] chr5 (11 HSPs)
chr5 (1-262)||(36174828-36175089)
chr5 (201-262)||(17031248-17031309)
chr5 (183-223)||(4689624-4689664)
chr5 (183-262)||(18470354-18470433)
chr5 (191-262)||(23091238-23091309)
chr5 (191-262)||(35701368-35701439)
chr5 (183-223)||(7208156-7208196)
chr5 (183-223)||(8560908-8560948)
chr5 (183-223)||(27839000-27839040)
chr5 (182-230)||(35760785-35760833)
chr5 (175-223)||(39918637-39918685)
[»] scaffold0650 (1 HSPs)
scaffold0650 (183-262)||(1569-1648)
[»] chr8 (17 HSPs)
chr8 (174-262)||(22756337-22756425)
chr8 (200-262)||(17805782-17805844)
chr8 (183-262)||(29610990-29611069)
chr8 (183-262)||(37618327-37618406)
chr8 (183-223)||(7591382-7591422)
chr8 (183-223)||(15001596-15001636)
chr8 (183-223)||(41548748-41548788)
chr8 (191-262)||(4052571-4052642)
chr8 (191-262)||(37664226-37664297)
chr8 (183-262)||(39642974-39643053)
chr8 (182-223)||(45114185-45114226)
chr8 (183-223)||(21272797-21272837)
chr8 (183-223)||(30501275-30501315)
chr8 (183-223)||(30542957-30542997)
chr8 (183-223)||(32303543-32303583)
chr8 (183-223)||(37474830-37474870)
chr8 (183-223)||(40389170-40389210)
[»] chr4 (21 HSPs)
chr4 (175-262)||(11056136-11056223)
chr4 (183-264)||(44640415-44640496)
chr4 (183-262)||(50729455-50729534)
chr4 (182-262)||(32181357-32181437)
chr4 (182-223)||(9807288-9807329)
chr4 (177-222)||(43739572-43739617)
chr4 (183-223)||(50178405-50178445)
chr4 (183-262)||(26083433-26083512)
chr4 (191-262)||(33552763-33552834)
chr4 (191-262)||(54543083-54543154)
chr4 (183-262)||(56154715-56154794)
chr4 (183-261)||(47361327-47361405)
chr4 (193-262)||(24210413-24210482)
chr4 (191-224)||(42870103-42870136)
chr4 (182-226)||(7381384-7381428)
chr4 (187-223)||(29593028-29593064)
chr4 (191-262)||(29616259-29616331)
chr4 (183-223)||(39078794-39078834)
chr4 (183-223)||(44324255-44324295)
chr4 (183-223)||(47642404-47642444)
chr4 (200-264)||(56487212-56487276)
[»] chr6 (11 HSPs)
chr6 (180-266)||(9614061-9614147)
chr6 (183-256)||(27824612-27824685)
chr6 (182-223)||(14925414-14925455)
chr6 (183-262)||(11279219-11279298)
chr6 (183-261)||(18597117-18597195)
chr6 (182-228)||(35004086-35004132)
chr6 (183-224)||(7396085-7396126)
chr6 (188-229)||(8342581-8342622)
chr6 (183-223)||(10960130-10960170)
chr6 (183-223)||(11613750-11613790)
chr6 (182-222)||(14925175-14925215)
[»] chr7 (7 HSPs)
chr7 (183-266)||(9913615-9913698)
chr7 (183-266)||(9927303-9927386)
chr7 (184-262)||(329565-329643)
chr7 (191-262)||(36769498-36769569)
chr7 (183-262)||(37967069-37967148)
chr7 (183-261)||(1363732-1363810)
chr7 (183-223)||(43368335-43368375)
[»] chr3 (14 HSPs)
chr3 (175-262)||(19906854-19906941)
chr3 (183-262)||(41682967-41683046)
chr3 (182-231)||(30043746-30043795)
chr3 (183-223)||(3864589-3864629)
chr3 (183-223)||(3867563-3867603)
chr3 (183-223)||(3964419-3964459)
chr3 (183-223)||(54622711-54622751)
chr3 (183-262)||(12349085-12349164)
chr3 (183-262)||(45690820-45690899)
chr3 (183-261)||(21374023-21374101)
chr3 (200-262)||(34026759-34026821)
chr3 (175-223)||(6179557-6179605)
chr3 (183-223)||(31882936-31882976)
chr3 (183-223)||(33364692-33364732)
[»] chr1 (23 HSPs)
chr1 (183-266)||(7837229-7837312)
chr1 (182-228)||(26733689-26733735)
chr1 (191-262)||(32289347-32289418)
chr1 (183-261)||(15539885-15539963)
chr1 (182-228)||(17291712-17291758)
chr1 (183-223)||(13994070-13994110)
chr1 (183-223)||(31004271-31004311)
chr1 (183-223)||(42512765-42512805)
chr1 (191-262)||(844727-844798)
chr1 (183-262)||(5109828-5109907)
chr1 (183-262)||(6029296-6029375)
chr1 (191-262)||(6711049-6711120)
chr1 (183-262)||(7146860-7146939)
chr1 (191-262)||(12890338-12890409)
chr1 (191-262)||(16386954-16387025)
chr1 (191-262)||(45490878-45490949)
chr1 (191-262)||(51264595-51264666)
chr1 (180-222)||(39282034-39282076)
chr1 (183-228)||(38663241-38663286)
chr1 (183-223)||(11772627-11772667)
chr1 (191-223)||(17888087-17888119)
chr1 (182-222)||(47242510-47242550)
chr1 (183-223)||(50304790-50304830)
[»] chr2 (9 HSPs)
chr2 (180-222)||(83401-83443)
chr2 (183-223)||(6896298-6896338)
chr2 (183-223)||(28824477-28824517)
chr2 (191-262)||(9732858-9732929)
chr2 (191-262)||(17540806-17540877)
chr2 (200-262)||(35114876-35114938)
chr2 (180-244)||(40767257-40767318)
chr2 (183-223)||(4641644-4641684)
chr2 (183-223)||(10399790-10399830)
[»] scaffold0025 (1 HSPs)
scaffold0025 (183-223)||(5365-5405)
[»] scaffold0208 (1 HSPs)
scaffold0208 (200-262)||(2281-2343)
[»] scaffold0027 (1 HSPs)
scaffold0027 (200-262)||(15263-15325)
[»] scaffold0595 (1 HSPs)
scaffold0595 (188-229)||(6873-6914)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 36174828 - 36175089
Alignment:
Q  1 tgaagtgggatctagaattttttccagccacgaccgtagagatgaaagtgtggagaccatgaaaatgccattcattattaatatgtttgtctttaattct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36174828 tgaagtgggatctagaattttttccagccacgaccgtagagatgaaagtgtggagaccatgaaaatgtcattcattattaatatgtttgtctttaattct 36174927  T
Q  101 ccttgaagtgtcatgtataacaacaaaattaacatcgtgacgtaaatgacgtgtttgatttactnnnnnnntaaaggataagacaacttcagttgtacgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||       ||||||| |||| ||||||||||||||||    
T  36174928 ccttgaagtgtcatgtataacaacaaaattaacatcgtgacgtaaatggtgtgtttgatttactaaaaaaataaaggacaagataacttcagttgtacgg 36175027  T
Q  201 tgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36175028 tgtttgatttgtaaaactgtttctaggatagtaaaaattagaggtaagggacaagacaaaaa 36175089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 17031309 - 17031248
Alignment:
Q  201 tgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||||||||||||||||||||  ||| |||| ||||| ||||||| ||||| ||||||||    
T  17031309 tgtttgatttgtaaaactgtttcagggacagtacaaattggaggcaaaggacaggacaaaaa 17031248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 4689624 - 4689664
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  4689624 acaacttcagttgtccagtgtttgatttgtaaaactgtttc 4689664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 18470354 - 18470433
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| ||||| | | ||||||||||||||||||||||||  ||| || | ||| |  |||||||||||||||||||||    
T  18470354 acaactccagttatccagtgtttgatttgtaaaactgtttcagggacagaacaaactgaaggcaagggacaagacaaaaa 18470433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 23091238 - 23091309
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| | ||||||||||||||||||||||||  | | || | ||| | ||||||||||||||||||||||    
T  23091238 agttgtccagtgtttgatttgtaaaactgtttcaggtacaggataaactggaggcaagggacaagacaaaaa 23091309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 35701439 - 35701368
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| | ||||||||||||||||||||||||| | | || | ||| | ||||||||||||| ||||||||    
T  35701439 agttgtccagtgtttgatttgtaaaactgtttctggtacaggacaaactggaggcaagggacaggacaaaaa 35701368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 7208156 - 7208196
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    ||||||| |||||| | ||||||||||||||||||||||||    
T  7208156 acaactttagttgtccagtgtttgatttgtaaaactgtttc 7208196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 8560908 - 8560948
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||||| | | ||||||||||||||||||||||||    
T  8560908 acaacttcagttattcagtgtttgatttgtaaaactgtttc 8560948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 27839000 - 27839040
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||| ||||||| | ||||||||||||||||||||||||    
T  27839000 acaactccagttgtccagtgtttgatttgtaaaactgtttc 27839040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 35760833 - 35760785
Alignment:
Q  182 gacaacttcagttgtacggtgtttgatttgtaaaactgtttctaggata 230  Q
    |||||||  ||||| || ||||||||||||||||||| |||||||||||    
T  35760833 gacaactctagttgcactgtgtttgatttgtaaaactatttctaggata 35760785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 39918685 - 39918637
Alignment:
Q  175 aggataagacaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||| |||||||||  |||||| | ||||||||||||||||||||||||    
T  39918685 aggacaagacaactctagttgtccagtgtttgatttgtaaaactgtttc 39918637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 1569 - 1648
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||||||||| | | |||||||||||||||||||||||| ||||||| | ||| | ||||||||||||||||||||||    
T  1569 acaacttcagttctccagtgtttgatttgtaaaactgtttcaaggataggacaaactggaggcaagggacaagacaaaaa 1648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 22756337 - 22756425
Alignment:
Q  174 aaggataagacaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    ||||| || |||||| ||||| |||  |||||||||||||||||||||||| |||||| | ||||| |||||||| |||||||||||||    
T  22756337 aaggacaaaacaactccagttatacaatgtttgatttgtaaaactgtttctgggataggacaaatttgaggcaagagacaagacaaaaa 22756425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 17805844 - 17805782
Alignment:
Q  200 gtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||||||||||||||||||||| || | || | ||| ||||||||||||||||||||||||    
T  17805844 gtgtttgatttgtaaaactgtttcaagtacaggacaaactagaggcaagggacaagacaaaaa 17805782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 29610990 - 29611069
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||||||||||| |  |||||||||||||||||||||||  ||| || | ||| | ||||||||||||| ||||||||    
T  29610990 acaacttcagttgtccaatgtttgatttgtaaaactgtttcagggacagaacaaactggaggcaagggacaggacaaaaa 29611069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 37618327 - 37618406
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| ||||||| ||||||||||||||||||||||||||  | | || | ||||| ||||||| ||||| ||||||||    
T  37618327 acaactccagttgtccggtgtttgatttgtaaaactgtttcaggtacaggacaaattggaggcaaaggacaggacaaaaa 37618406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 7591382 - 7591422
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  7591382 acaacttcagttgtccagtgtttgatttgtaaaactgtttc 7591422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 15001636 - 15001596
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  15001636 acaacttcagttgtccagtgtttgatttgtaaaactgtttc 15001596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 41548788 - 41548748
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  41548788 acaacttcagttgtccagtgtttgatttgtaaaactgtttc 41548748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 4052642 - 4052571
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| | ||||||||||||||||||||||||  | | || | ||||| ||||||||||||| ||||||||    
T  4052642 agttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaattggaggcaagggacaggacaaaaa 4052571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 37664226 - 37664297
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| | ||||||||||||||||||||||||  | | || | ||| ||||||||||||||| ||||||||    
T  37664226 agttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactagaggcaagggacaggacaaaaa 37664297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 39643053 - 39642974
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||||||||||| | ||||||||||| ||||||||||||  | | || | ||| | |||||||||||||||| |||||    
T  39643053 acaacttcagttgtccagtgtttgatttttaaaactgtttcaggtacaggacaaactggaggcaagggacaagataaaaa 39642974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 45114226 - 45114185
Alignment:
Q  182 gacaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||| |||| | ||||||||||||||||||||||||    
T  45114226 gacaacttcaattgttcagtgtttgatttgtaaaactgtttc 45114185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 21272837 - 21272797
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    ||||||| |||||| | ||||||||||||||||||||||||    
T  21272837 acaactttagttgtccagtgtttgatttgtaaaactgtttc 21272797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 30501315 - 30501275
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||||||  | ||||||||||||||||||||||||    
T  30501315 acaacttcagttgcccagtgtttgatttgtaaaactgtttc 30501275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 30542957 - 30542997
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    ||||||| |||||| | ||||||||||||||||||||||||    
T  30542957 acaactttagttgtccagtgtttgatttgtaaaactgtttc 30542997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 32303543 - 32303583
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    ||||||| |||||| | ||||||||||||||||||||||||    
T  32303543 acaactttagttgttcagtgtttgatttgtaaaactgtttc 32303583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 37474870 - 37474830
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||| ||||||| | ||||||||||||||||||||||||    
T  37474870 acaactccagttgtccagtgtttgatttgtaaaactgtttc 37474830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 40389210 - 40389170
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||| ||||||| | ||||||||||||||||||||||||    
T  40389210 acaactccagttgtccagtgtttgatttgtaaaactgtttc 40389170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 262
Target Start/End: Complemental strand, 11056223 - 11056136
Alignment:
Q  175 aggataagacaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||||  | | || | ||| | ||||||||||||||||||||||    
T  11056223 aggataaaacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagggacaagacaaaaa 11056136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 44640496 - 44640415
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaatt 264  Q
    |||||||||||||||| ||||||||||||||||||||||| | | | |  | ||| |||||||||| |||||||||||||||    
T  44640496 acaacttcagttgtacagtgtttgatttgtaaaactgtttatggaaaatgacaaactagaggcaagagacaagacaaaaatt 44640415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 50729455 - 50729534
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||||||||||| | ||||||||||||||||||||||||  ||| || | ||| | ||||||||||||| ||||||||    
T  50729455 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacagaacaaactggaggcaagggacatgacaaaaa 50729534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 32181437 - 32181357
Alignment:
Q  182 gacaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||||| |||||| | |||||||||||||||||||||||| || | || | ||| |||| |||||||||| ||||||||    
T  32181437 gacaactttagttgtccagtgtttgatttgtaaaactgtttcaagtacaggacaaactagatgcaagggacaggacaaaaa 32181357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 9807329 - 9807288
Alignment:
Q  182 gacaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    ||||||||||||||| | ||||||||||||||||||||||||    
T  9807329 gacaacttcagttgtccagtgtttgatttgtaaaactgtttc 9807288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 43739617 - 43739572
Alignment:
Q  177 gataagacaacttcagttgtacggtgtttgatttgtaaaactgttt 222  Q
    |||||||||||||||||||||   ||||||||||||||||||||||    
T  43739617 gataagacaacttcagttgtaaaatgtttgatttgtaaaactgttt 43739572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 50178405 - 50178445
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  50178405 acaacttcagttgtccagtgtttgatttgtaaaactgtttc 50178445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 26083512 - 26083433
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    ||||||||||||||   ||||||||||||||||| ||||||  ||| || | ||| | ||||||||||||| ||||||||    
T  26083512 acaacttcagttgtttagtgtttgatttgtaaaattgtttcagggacagaacaaactggaggcaagggacatgacaaaaa 26083433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 33552763 - 33552834
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| | ||||||||||||||||||||||||  | | || | ||||| || |||||||||||||||||||    
T  33552763 agttgttcagtgtttgatttgtaaaactgtttcaggtacaggacaaattggatgcaagggacaagacaaaaa 33552834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 54543154 - 54543083
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| | ||||||||||||||||||| |||| || | || | ||||| ||||||||||||| ||||||||    
T  54543154 agttgttcagtgtttgatttgtaaaactatttcaagtacaggacaaattggaggcaagggacaggacaaaaa 54543083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 56154794 - 56154715
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    ||||||| |||||| | ||||||||||||||||||||||||  | | || ||||| | |||||||||||||  |||||||    
T  56154794 acaactttagttgtccagtgtttgatttgtaaaactgtttcaggtacaggaaaaactggaggcaagggacagaacaaaaa 56154715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 47361327 - 47361405
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaa 261  Q
    ||||||| |||||| | ||||||||||||||||||||||||  | | || | |||   |||||||||||||||||||||    
T  47361327 acaactttagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaaccggaggcaagggacaagacaaaa 47361405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 24210482 - 24210413
Alignment:
Q  193 ttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||| ||||||||||||||||||||||||||  | | || | ||| | ||||||||||||| ||||||||    
T  24210482 ttgtccggtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagggacaggacaaaaa 24210413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 42870136 - 42870103
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttct 224  Q
    |||||| |||||||||||||||||||||||||||    
T  42870136 agttgtccggtgtttgatttgtaaaactgtttct 42870103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 7381428 - 7381384
Alignment:
Q  182 gacaacttcagttgtacggtgtttgatttgtaaaactgtttctag 226  Q
    ||||||| || || ||||||||||||||||||||| |||||||||    
T  7381428 gacaactccaattatacggtgtttgatttgtaaaattgtttctag 7381384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 29593064 - 29593028
Alignment:
Q  187 cttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||| | ||||||||||||||||||||||||    
T  29593064 cttcagttgtccagtgtttgatttgtaaaactgtttc 29593028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 29616331 - 29616259
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttctagg-atagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| | |||||||||||||||||||||||| ||| | || | ||| | ||||||||||||| ||||||||    
T  29616331 agttgtccagtgtttgatttgtaaaactgtttcaaggtacaggacaaactggaggcaagggacaggacaaaaa 29616259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 39078834 - 39078794
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||| ||||||| | ||||||||||||||||||||||||    
T  39078834 acaactccagttgtccagtgtttgatttgtaaaactgtttc 39078794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 44324255 - 44324295
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||| ||||||| | ||||||||||||||||||||||||    
T  44324255 acaactccagttgttcagtgtttgatttgtaaaactgtttc 44324295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 47642404 - 47642444
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||| ||||||| | ||||||||||||||||||||||||    
T  47642404 acaactccagttgttcagtgtttgatttgtaaaactgtttc 47642444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 56487212 - 56487276
Alignment:
Q  200 gtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaatt 264  Q
    ||||||||||||||||||||||||    |||| | ||| | ||||||||||||| ||||||||||    
T  56487212 gtgtttgatttgtaaaactgtttcagatataggacaaacttgaggcaagggacaggacaaaaatt 56487276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 266
Target Start/End: Complemental strand, 9614147 - 9614061
Alignment:
Q  180 aagacaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaattga 266  Q
    |||| ||||||||||||||  ||||||||||||||||||||||| |||| || | ||| | ||||||||||||| ||||||| ||||    
T  9614147 aagaaaacttcagttgtacaatgtttgatttgtaaaactgtttcaaggacaggataaactggaggcaagggacatgacaaaatttga 9614061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 27824612 - 27824685
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaaga 256  Q
    |||| ||||||||||| ||||||||||||||||||||||| | ||| || | ||| ||||||||||||| ||||    
T  27824612 acaatttcagttgtacagtgtttgatttgtaaaactgtttttgggaaaggacaaactagaggcaagggataaga 27824685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 14925414 - 14925455
Alignment:
Q  182 gacaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    ||||||||||||||| | ||||||||||||||||||||||||    
T  14925414 gacaacttcagttgtccagtgtttgatttgtaaaactgtttc 14925455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 11279298 - 11279219
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| ||||||| | |||||||||||||||||||||||| || | || | ||| | |||||| |||||| ||||||||    
T  11279298 acaactccagttgtccagtgtttgatttgtaaaactgtttcaagtacaggacaaactggaggcatgggacaggacaaaaa 11279219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 18597117 - 18597195
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaa 261  Q
    |||| ||||||||| | ||||||||||||||||||||||||  |||||  | |||   ||||||||||||| |||||||    
T  18597117 acaatttcagttgttcagtgtttgatttgtaaaactgtttcagggatatgacaaaccggaggcaagggacatgacaaaa 18597195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 35004086 - 35004132
Alignment:
Q  182 gacaacttcagttgtacggtgtttgatttgtaaaactgtttctagga 228  Q
    ||||||| ||||||| |||||||||||||||||||| |||| |||||    
T  35004086 gacaactccagttgtgcggtgtttgatttgtaaaacggtttatagga 35004132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 7396085 - 7396126
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttct 224  Q
    |||| |||||||||| ||||||||||||||||| ||||||||    
T  7396085 acaatttcagttgtatggtgtttgatttgtaaagctgtttct 7396126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 8342581 - 8342622
Alignment:
Q  188 ttcagttgtacggtgtttgatttgtaaaactgtttctaggat 229  Q
    ||||||||||| |||||| |||||||||||||||||| ||||    
T  8342581 ttcagttgtacagtgtttaatttgtaaaactgtttctgggat 8342622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 10960170 - 10960130
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||| ||||||| | ||||||||||||||||||||||||    
T  10960170 acaactccagttgtccagtgtttgatttgtaaaactgtttc 10960130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 11613750 - 11613790
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    ||||||| |||||| | ||||||||||||||||||||||||    
T  11613750 acaactttagttgtccagtgtttgatttgtaaaactgtttc 11613790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 14925175 - 14925215
Alignment:
Q  182 gacaacttcagttgtacggtgtttgatttgtaaaactgttt 222  Q
    ||||||||||||||| | ||||||||||||||||| |||||    
T  14925175 gacaacttcagttgtccagtgtttgatttgtaaaattgttt 14925215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 9913698 - 9913615
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaattga 266  Q
    |||||| ||||||| ||||||||||||||||||||| ||||  | | || | ||| ||||||||||||||| ||||||||||||    
T  9913698 acaactccagttgtccggtgtttgatttgtaaaactatttcaggtacaggataaactagaggcaagggacaggacaaaaattga 9913615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 9927386 - 9927303
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaattga 266  Q
    |||||| ||||||| ||||||||||||||||||||| ||||  | | || | ||| ||||||||||||||| ||||||||||||    
T  9927386 acaactccagttgtccggtgtttgatttgtaaaactatttcaggtacaggataaactagaggcaagggacaggacaaaaattga 9927303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 329643 - 329565
Alignment:
Q  184 caacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    ||||| ||||||| | ||||||||||||||||||||||||  ||| || | ||| | ||||||| ||||||||||||||    
T  329643 caactccagttgtcccgtgtttgatttgtaaaactgtttcagggacagaacaaactggaggcaaaggacaagacaaaaa 329565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 36769498 - 36769569
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| | ||||||||||||||||||||||||  | | || | ||| ||||||||||||||| ||||||||    
T  36769498 agttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactagaggcaagggacaggacaaaaa 36769569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 37967148 - 37967069
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    ||||||| |||| | ||||||||||||||||||||||||||  | | |  | ||||| || |||||||||||||||||||    
T  37967148 acaactttagttctccggtgtttgatttgtaaaactgtttcaggtacatgacaaattggatgcaagggacaagacaaaaa 37967069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 1363810 - 1363732
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaa 261  Q
    |||||||||||||| | ||||||||||||||||| ||||||  | | || | ||| | ||||||||||||| |||||||    
T  1363810 acaacttcagttgtccagtgtttgatttgtaaaattgtttcatgtacaggacaaactggaggcaagggacatgacaaaa 1363732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 43368375 - 43368335
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||| ||||||| | ||||||||||||||||||||||||    
T  43368375 acaactccagttgtccagtgtttgatttgtaaaactgtttc 43368335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 262
Target Start/End: Complemental strand, 19906941 - 19906854
Alignment:
Q  175 aggataagacaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    ||||||| |||||||||||||| | ||||||||||||||||| ||||||  ||| || | ||| | ||||||||||||| ||||||||    
T  19906941 aggataaaacaacttcagttgtccagtgtttgatttgtaaaattgtttcagggacagaacaaactggaggcaagggacaggacaaaaa 19906854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 41682967 - 41683046
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||||||||||| | ||||||||||||||||||||||||  | | || | ||| | |||||||| |||||||||||||    
T  41682967 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaagacaaaaa 41683046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 30043746 - 30043795
Alignment:
Q  182 gacaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatag 231  Q
    |||||| |||||| ||||||||||||||||||||| ||||||| ||||||    
T  30043746 gacaacgtcagttttacggtgtttgatttgtaaaattgtttctgggatag 30043795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 3864589 - 3864629
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  3864589 acaactttagttgtccggtgtttgatttgtaaaactgtttc 3864629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 3867563 - 3867603
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  3867563 acaactccagttgtccggtgtttgatttgtaaaactgtttc 3867603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 3964459 - 3964419
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  3964459 acaacttcagttgtccagtgtttgatttgtaaaactgtttc 3964419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 54622711 - 54622751
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  54622711 acaacttcagttgtccggtatttgatttgtaaaactgtttc 54622751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 12349085 - 12349164
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| ||||||| | ||||||||||||||||||||||||  | | || | ||| | ||||||||||||| ||||||||    
T  12349085 acaactccagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagggacaggacaaaaa 12349164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 45690820 - 45690899
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||||||||||| | |||||||||||| |||||||||||  | | || | ||||| ||||||| ||||| ||||||||    
T  45690820 acaacttcagttgtccagtgtttgatttgcaaaactgtttcaggtacaggataaattggaggcaaaggacaggacaaaaa 45690899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 21374101 - 21374023
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaa 261  Q
    ||||||||||||||   ||||||||||||||||||||||||  | | || | ||| | ||||||||||||| |||||||    
T  21374101 acaacttcagttgtctagtgtttgatttgtaaaactgtttcaggtacaggacaaacttgaggcaagggacaggacaaaa 21374023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 34026821 - 34026759
Alignment:
Q  200 gtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    ||||||||||||||||||||||||  | |||| | ||| | ||||||||||||| ||||||||    
T  34026821 gtgtttgatttgtaaaactgtttcaggtataggacaaactggaggcaagggacatgacaaaaa 34026759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 6179605 - 6179557
Alignment:
Q  175 aggataagacaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    ||||||| |||||| ||||||| | |||||||||||||||||| |||||    
T  6179605 aggataaaacaactccagttgtccagtgtttgatttgtaaaacagtttc 6179557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 31882936 - 31882976
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||| ||||||| | ||||||||||||||||||||||||    
T  31882936 acaactccagttgtccagtgtttgatttgtaaaactgtttc 31882976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 33364692 - 33364732
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  33364692 acaacttcagttgtccagtgttttatttgtaaaactgtttc 33364732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 7837312 - 7837229
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaattga 266  Q
    |||||||||||||| | ||||||||||||||||||||||||  | | |  | ||| ||||||||||||||| ||||||||||||    
T  7837312 acaacttcagttgttcagtgtttgatttgtaaaactgtttcaggaacatgacaaactagaggcaagggacatgacaaaaattga 7837229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 26733735 - 26733689
Alignment:
Q  182 gacaacttcagttgtacggtgtttgatttgtaaaactgtttctagga 228  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||    
T  26733735 gacaacttcagttgtacgatgtttgatttgtaaaactgtttttagga 26733689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 32289347 - 32289418
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| | ||||||||||||||||||||||||  | | || | ||||| ||||||||||||||||||||||    
T  32289347 agttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaattggaggcaagggacaagacaaaaa 32289418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 15539885 - 15539963
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaa 261  Q
    |||||| ||||||| | |||||||||||||||||||||||| |||| || | ||| | |||||||| |||| |||||||    
T  15539885 acaactccagttgtccagtgtttgatttgtaaaactgtttcaaggacagaacaaactggaggcaagagacaggacaaaa 15539963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 17291758 - 17291712
Alignment:
Q  182 gacaacttcagttgtacggtgtttgatttgtaaaactgtttctagga 228  Q
    ||||||| |||||||||||| |||||||||||||||||||| |||||    
T  17291758 gacaactccagttgtacggtatttgatttgtaaaactgtttttagga 17291712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 13994070 - 13994110
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  13994070 acaacttcagttgtccagtgtttgatttgtaaaactgtttc 13994110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 31004311 - 31004271
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  31004311 acaacttcagttgtccagtgtttgatttgtaaaactgtttc 31004271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 42512765 - 42512805
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  42512765 acaacttcagttgtccagtgtttgatttgtaaaactgtttc 42512805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 844727 - 844798
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| | ||||||||||||||||||||||||  | | || | ||| ||||||||||||||| ||||||||    
T  844727 agttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactagaggcaagggacaggacaaaaa 844798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 5109907 - 5109828
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| ||||||| | ||||||||||||||||||||||||  | | |  | ||||| ||||||||||||| ||||||||    
T  5109907 acaactccagttgttcagtgtttgatttgtaaaactgtttcaggtacaagacaaattggaggcaagggacaggacaaaaa 5109828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 6029296 - 6029375
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| ||||||| | ||||||||||||||||||||||||  ||| || | ||| |  |||||||||||| ||||||||    
T  6029296 acaactccagttgtccagtgtttgatttgtaaaactgtttcagggacagaacaaactgaaggcaagggacaggacaaaaa 6029375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 6711049 - 6711120
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| | ||||||||||||||||||||||||  | | || | ||| ||||||||||||||| ||||||||    
T  6711049 agttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactagaggcaagggacaggacaaaaa 6711120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 7146939 - 7146860
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||||||||||||  ||||||||||||||||| ||||| | ||| || | ||| ||||| ||| |||||| |||||||    
T  7146939 acaacttcagttgtatagtgtttgatttgtaaaattgtttttgggacagaataaactagagacaaaggacaaaacaaaaa 7146860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 12890409 - 12890338
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| | ||||||||||||||||||||||||| | | || | ||| | ||||||||||||| ||||||||    
T  12890409 agttgtccagtgtttgatttgtaaaactgtttctggtacaggataaactggaggcaagggacaggacaaaaa 12890338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 16387025 - 16386954
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| | ||||||||||||||||||||||||  | | || | ||| ||||||||||||||| ||||||||    
T  16387025 agttgttcagtgtttgatttgtaaaactgtttcaggtacaggacaaactagaggcaagggacaggacaaaaa 16386954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 45490878 - 45490949
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| | |||||||||||||||||||||||| || | || | ||| | ||||||||||||| ||||||||    
T  45490878 agttgtccagtgtttgatttgtaaaactgtttcaagtacaggacaaactggaggcaagggacatgacaaaaa 45490949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 51264666 - 51264595
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| | ||||||||||||||||||||||||  | | || | ||| | ||||||||||||||||||||||    
T  51264666 agttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagggacaagacaaaaa 51264595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 39282076 - 39282034
Alignment:
Q  180 aagacaacttcagttgtacggtgtttgatttgtaaaactgttt 222  Q
    |||| |||||||||||| | |||||||||||||||||||||||    
T  39282076 aagataacttcagttgttcagtgtttgatttgtaaaactgttt 39282034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 38663286 - 38663241
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttctagga 228  Q
    |||||| ||||||| | |||||||||||||||||||||||| ||||    
T  38663286 acaactccagttgtccagtgtttgatttgtaaaactgtttcaagga 38663241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 11772627 - 11772667
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||| ||||||| | ||||||||||||||||||||||||    
T  11772627 acaactccagttgtccagtgtttgatttgtaaaactgtttc 11772667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 17888119 - 17888087
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||| ||||||||||||||||||||||||||    
T  17888119 agttgtccggtgtttgatttgtaaaactgtttc 17888087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 47242510 - 47242550
Alignment:
Q  182 gacaacttcagttgtacggtgtttgatttgtaaaactgttt 222  Q
    |||||||||||||||| ||||||| |||||||||| |||||    
T  47242510 gacaacttcagttgtatggtgtttaatttgtaaaattgttt 47242550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 50304830 - 50304790
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||| ||||||| | ||||||||||||||||||||||||    
T  50304830 acaactccagttgtccagtgtttgatttgtaaaactgtttc 50304790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 83443 - 83401
Alignment:
Q  180 aagacaacttcagttgtacggtgtttgatttgtaaaactgttt 222  Q
    |||||||||||||||| || |||||||||||||||||||||||    
T  83443 aagacaacttcagttgcacagtgtttgatttgtaaaactgttt 83401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 6896338 - 6896298
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  6896338 acaacttcagttgtccagtgtttgatttgtaaaactgtttc 6896298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 28824477 - 28824517
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  28824477 acaacttcagttgtccagtgtttgatttgtaaaactgtttc 28824517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 9732858 - 9732929
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| | ||||||||||||||||||||||||  | | || | ||| | ||||||||||||||||||||||    
T  9732858 agttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagggacaagacaaaaa 9732929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 17540877 - 17540806
Alignment:
Q  191 agttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    |||||| | |||||||||||||||||||||||| || | || | ||| | ||||||||||||| ||||||||    
T  17540877 agttgtccagtgtttgatttgtaaaactgtttcaagtacaggacaaactggaggcaagggacaggacaaaaa 17540806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 35114938 - 35114876
Alignment:
Q  200 gtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    ||||||||||||||||||||||||  | | || | ||| ||||||||||||||| ||||||||    
T  35114938 gtgtttgatttgtaaaactgtttcaggtacaggacaaactagaggcaagggacaggacaaaaa 35114876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 40767318 - 40767257
Alignment:
Q  180 aagacaacttcagttgtacggtgtttgatttgtaaaactgtttctaggatagtaaaaattagagg 244  Q
    ||||||||||||||| ||  ||||||||||| |||||||||||||||||| | | ||||||||||    
T  40767318 aagacaacttcagttata--gtgtttgattt-taaaactgtttctaggattgaacaaattagagg 40767257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 4641684 - 4641644
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    ||||||| |||||| | ||||||||||||||||||||||||    
T  4641684 acaactttagttgttcagtgtttgatttgtaaaactgtttc 4641644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 10399790 - 10399830
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||||||| | ||||||||||||||||||| ||||    
T  10399790 acaacttcagttgttcagtgtttgatttgtaaaactatttc 10399830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 5365 - 5405
Alignment:
Q  183 acaacttcagttgtacggtgtttgatttgtaaaactgtttc 223  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  5365 acaacttcagttgtccagtgtttgatttgtaaaactgtttc 5405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 2281 - 2343
Alignment:
Q  200 gtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    ||||||||||||||||||||||||  | | || | ||||| ||||||||||||| ||||||||    
T  2281 gtgtttgatttgtaaaactgtttcaggtacaggacaaattggaggcaagggacaggacaaaaa 2343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 15325 - 15263
Alignment:
Q  200 gtgtttgatttgtaaaactgtttctaggatagtaaaaattagaggcaagggacaagacaaaaa 262  Q
    ||||||||||||||||||||||||  | | || | ||| | ||||||||||||||||||||||    
T  15325 gtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagggacaagacaaaaa 15263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 6873 - 6914
Alignment:
Q  188 ttcagttgtacggtgtttgatttgtaaaactgtttctaggat 229  Q
    ||||||||||| |||||| |||||||||||||||||| ||||    
T  6873 ttcagttgtacagtgtttaatttgtaaaactgtttctgggat 6914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University