View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_72 (Length: 265)
Name: NF7721_high_72
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_72 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 24216105 - 24215873
Alignment:
| Q |
19 |
cccccatcatcggcctccacatcgaacagagtcaatcaaactcagccgccactctccaactctgcatcaacaacttctgcctcgttttccagatcatcca |
118 |
Q |
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| T |
24216105 |
cccccatcatcggcctccacatcaaacggagtcaatcaaactcagccgccactctccaactctgcatcaacaacttctgcctcgttttccagatcatcca |
24216006 |
T |
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| Q |
119 |
ctccccctacgtttgtgcctcgctctctaactaccttgcaagccctcacaacagattcattggtatcggaatcaaagcagacgttgtaaagcttctagaa |
218 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24216005 |
ctccccctacgtttgtgcttcgctctctaactacctcgcaagccctcacaacagattcattggtatcggaatcaaagcagacgttgtaaagcttctagaa |
24215906 |
T |
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| Q |
219 |
gatcatggtctccacttggcgaattatgttgat |
251 |
Q |
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| T |
24215905 |
gatcatggtctccacttggcgaattatgttgat |
24215873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 24210346 - 24210119
Alignment:
| Q |
21 |
cccatcatcggcctccacatcgaacagagtcaatcaaactcagccgccactctccaactctgcatcaacaacttctgcctcgttttccagatcatccact |
120 |
Q |
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|||||||||||||||||||| |||| ||||| |||||||||||| ||||||||| |||||||| ||||||||||||||||||| ||| ||| |||||| |
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| T |
24210346 |
cccatcatcggcctccacattgaacggagtccatcaaactcagcagccactctcaccctctgcattaacaacttctgcctcgtttaccaaatcttccact |
24210247 |
T |
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| Q |
121 |
ccccctacgtttgtgcctcgctctctaactaccttgcaagccctcacaacagattcattggtatcggaatcaaagcagacgttgtaaagcttctagaaga |
220 |
Q |
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| T |
24210246 |
ccccctatcttaacgcctccctctccaactacctttctaaccctaacaacagattcgttggggttggagcaaaagaagatgttaaggagcttctaaaaaa |
24210147 |
T |
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| Q |
221 |
tcatggtctccacttggcgaattatgtt |
248 |
Q |
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||||| |||||||||||| ||||||||| |
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| T |
24210146 |
tcatgatctccacttggcaaattatgtt |
24210119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 24217433 - 24217362
Alignment:
| Q |
110 |
gatcatccactccccctacgtttgtgcctcgctctctaactaccttgcaagccctcacaacagattcattggta |
183 |
Q |
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| T |
24217433 |
gatcatccaccccccctacgtttttgcctc--tctctaattaccttgcaagccctcacaacagattcattggta |
24217362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 24224864 - 24224810
Alignment:
| Q |
72 |
ctccaactctgcatcaacaacttctgcctcgttttccagatcatccactccccct |
126 |
Q |
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||||| ||||| ||||||||| ||||||||||||||| ||||| |||||||||| |
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| T |
24224864 |
ctccagctctgtatcaacaaccgctgcctcgttttccaaatcatgcactccccct |
24224810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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