View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_80 (Length: 250)
Name: NF7721_high_80
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_80 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 6728070 - 6727871
Alignment:
| Q |
24 |
tagtactatggaggaggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttctcactct |
123 |
Q |
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| T |
6728070 |
tagtactatggaggaggaagaaacttggtactattgttctaattgcggcaacaacaacatgggtgtcgatggaagtttatcaatttaactttctcactct |
6727971 |
T |
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| Q |
124 |
catctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttccccttcctctacttct |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6727970 |
catctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttctccttcctctacttct |
6727871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 6731137 - 6730938
Alignment:
| Q |
24 |
tagtactatggaggaggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttctcactct |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |
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| T |
6731137 |
tagtactatggaggaggaagaaacttggtactattgttcttattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaaattcctcaccct |
6731038 |
T |
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| Q |
124 |
catctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttccccttcctctacttct |
223 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
6731037 |
catctcatggatcactatatttgttgttacttcaatattcctctattccaatatgcttacatttttcggcaagtgagcaccttctccttcctctacttct |
6730938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 6785912 - 6785699
Alignment:
| Q |
18 |
atgacatagtactatggaggaggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttct |
117 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||| || ||||| ||| | ||||||||| |||||||||||| || |
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| T |
6785912 |
atgacatagtactatggaggaggaagaaacttagtgctattgttctaattgtggcaacatcatcatggatgttgttggaagtttgtcaatttaacttcct |
6785813 |
T |
|
| Q |
118 |
cactctcatctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttccccttcctct |
217 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
6785812 |
cactctcatctcatggctcgctatatttgttgttacttcaatattcctctattccaatatgcttacatttttcggcaagtgagcaccttctccttcctct |
6785713 |
T |
|
| Q |
218 |
acttcttctaatgc |
231 |
Q |
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|||||||||||||| |
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| T |
6785712 |
acttcttctaatgc |
6785699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 27 - 231
Target Start/End: Complemental strand, 6760864 - 6760660
Alignment:
| Q |
27 |
tactatggaggaggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttctcactctcat |
126 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||| || ||||| ||| | ||||||||| |||||||||||| ||||||||||| |
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| T |
6760864 |
tactatggaggaggaagaaacttagtactattgttctaattgtggcaacatcatcatggatgttgttggaagtttgtcaatttaacttcctcactctcat |
6760765 |
T |
|
| Q |
127 |
ctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttccccttcctctacttcttct |
226 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6760764 |
ctcatggctcgctatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttctccttcctctacttcttct |
6760665 |
T |
|
| Q |
227 |
aatgc |
231 |
Q |
| |
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||||| |
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| T |
6760664 |
aatgc |
6760660 |
T |
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