View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_89 (Length: 240)
Name: NF7721_high_89
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_89 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 20361393 - 20361192
Alignment:
| Q |
13 |
cattattctcacgaactttagtctcacgatccaaccaagccttgttcataaacacttgaccatcagaacgcctcgtatacataaagggtcgagggtcgtt |
112 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
20361393 |
cattatactcacgaactttagtctcacgatccaaccaagccttgttcataaacacttgaccatcagaacgcctcgtatacataaatggtcgagggtcgtt |
20361294 |
T |
|
| Q |
113 |
ctcatacataagccctaattcctcatcatcactatactcagaatcttcttcttgcgattnnnnnnnnnnnnnttctcccagttatcctcctcttcttctt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
20361293 |
ctcatacataagccctaattcctcatcatcactatactcagaatct---tcttgcgatt-----cccccgccttctcccagttatcctcctcttcttctt |
20361202 |
T |
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| Q |
213 |
ccgatttctc |
222 |
Q |
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|||||||||| |
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| T |
20361201 |
ccgatttctc |
20361192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 32194612 - 32194457
Alignment:
| Q |
13 |
cattattctcacgaactttagtctcacgatccaaccaagccttgttcataaacacttgaccatcagaacgcctcgtatacataaagggtcgaggg---tc |
109 |
Q |
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|||||| ||||| |||||||| ||||| ||||||||||||||||||| ||||||| | |||||||||||||| | |||||||||| ||| | | || |
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| T |
32194612 |
cattatactcaccaactttagcctcaccatccaaccaagccttgttcttaaacacataaccatcagaacgccgcttatacataaatggtttactgtcctc |
32194513 |
T |
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| Q |
110 |
gttctcatacataagccctaattcctcatcatcactatactcagaatcttcttctt |
165 |
Q |
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||||||||| | || ||||||||| |||||||||||||||||||||||||| |
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| T |
32194512 |
attctcatacttggaccagtattcctcataatcactatactcagaatcttcttctt |
32194457 |
T |
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