View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_high_97 (Length: 221)
Name: NF7721_high_97
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_high_97 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 18535581 - 18535460
Alignment:
| Q |
83 |
tatcaaccaagtctagaatccatatctcaaaaacaattagaatagtccaatccttatttttataccacaaacctgtatttgctataatggtggttaaaag |
182 |
Q |
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| T |
18535581 |
tatcaaccaagtctagaatccatatctcaaaaacaattagaatagtccaatccttatttttataccacaaacctgtatttgctataaaggtggttaaaag |
18535482 |
T |
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| Q |
183 |
tcatacatgatatttaaagtca |
204 |
Q |
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|||||||||||||||||||||| |
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| T |
18535481 |
tcatacatgatatttaaagtca |
18535460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 86 - 204
Target Start/End: Complemental strand, 18538939 - 18538818
Alignment:
| Q |
86 |
caaccaagtctagaatccatatctcaaaaacaattagaatagtccaatccttatttttataccacaaacctgtatttgctataatggtggttaaaagtca |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| |
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| T |
18538939 |
caaccaagtctagaatccatatctcaaaaacaattagaatagtccaatccttatttttacactagaaacctgtatttgctataatggtggttaaaagtca |
18538840 |
T |
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| Q |
186 |
ta---catgatatttaaagtca |
204 |
Q |
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|| ||||||||||||||||| |
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| T |
18538839 |
tactgcatgatatttaaagtca |
18538818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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