View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_10 (Length: 593)
Name: NF7721_low_10
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 76 - 582
Target Start/End: Original strand, 41746567 - 41747069
Alignment:
| Q |
76 |
ggtacttgataactggtttgttactaactgagaaatcagagtgtgtttgaggcacaaacgtatgaatgtcagaatgtgtctacttataaatgtgtgt--t |
173 |
Q |
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| T |
41746567 |
ggtacttgataactggttggttactaactgagaaatcagagtgtgtttgaggcacaaacgtatgaatgtcagaatgtgtctacttataaatgtgtgtgtt |
41746666 |
T |
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| Q |
174 |
acaaggaaaaagattttgtcaacnnnnnnnnnnnnnggaaaaggatttaagtggaaggaggggttacgaattttcagaggaaagtggtgtgttaataagt |
273 |
Q |
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| T |
41746667 |
acaaggaaaaagattttgtcaacaaaaaaaaaaaa-ggaaaaggatttaagtggaaggaggggttacgaattctcagaggaaagtggtgtgttaataagt |
41746765 |
T |
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| Q |
274 |
tttggaatcatttaattgcaattatagaaccaagctgcaccattatcataatcatatgcagtgtatgcattttaatttgcatttgcatttgcattaacgt |
373 |
Q |
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| T |
41746766 |
tttggaatcatttaattgcaattatagaaccaagctgcaccattatcataatcatatgcagtgtatgcattttaatttacatt------tgcattaacgt |
41746859 |
T |
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| Q |
374 |
ctaattactcattactcattcgcgtccactacgatggggtgttatccttagtttttctcactcatgtgcatgccatcacattgtttttaattttatctag |
473 |
Q |
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| T |
41746860 |
ctaattactcattactcattcgcgtccactacgatggggtgttatccttagtttttctcactcatgtgcacgccatcacattgtttttaattttatctag |
41746959 |
T |
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| Q |
474 |
gaaaacatcatatgataaaaatcagaacccaaataacaaaatgaaaaacaattcttatttctc-ttttttaattcgtggaagtccttattctatgtatct |
572 |
Q |
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| T |
41746960 |
gaaaacatcatatcataaaaatcagaacccaaataacaaaatgaaaaacaattcttatttctctttttttaatgtgtggaagtccttattctatgtatct |
41747059 |
T |
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| Q |
573 |
attgatgtcc |
582 |
Q |
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| T |
41747060 |
attgatgtcc |
41747069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 41753898 - 41753944
Alignment:
| Q |
220 |
ttaagtggaaggaggggttacgaattttcagaggaaagtggtgtgtt |
266 |
Q |
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| T |
41753898 |
ttaagcggaaggaagggttccgaattttcagatgaaagtggtgtgtt |
41753944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 510 - 554
Target Start/End: Complemental strand, 43003616 - 43003572
Alignment:
| Q |
510 |
caaaatgaaaaacaattcttatttctcttttttaattcgtggaag |
554 |
Q |
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| T |
43003616 |
caaaatgagaaacaattcctatttctcttttttaattcgtggaag |
43003572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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