View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_108 (Length: 242)
Name: NF7721_low_108
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_108 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27628358 - 27628580
Alignment:
| Q |
1 |
atgcgtaaaccttctttacacaatcttttaaattgtcaatttagtaattatatatcatagtaggttgttcaaagctagtcttagatcataatatttagat |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27628358 |
atgcgtaaaccttctttacacaatcctttaaattgtcaatttagtaattatatatcatagtaggttgttcaaagctagtcttggatcataatatttagat |
27628457 |
T |
|
| Q |
101 |
aaacaatctgaattgtatcgcaaaattcaacatcattatatatcatagtaggcatctttcttgccatgtaatgtgaaatcattcgtgagtttcaattccg |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27628458 |
aaaccatctgaattgtatcgcaaaattcaacatcattatatatcatagtaggcatctttcttgccatgtaatgtgaaatcattcgtgagtttcaattccg |
27628557 |
T |
|
| Q |
201 |
ttacgtagaaagtatacatcgtt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
27628558 |
ttacgtagaaagtatacatcgtt |
27628580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 34514147 - 34514357
Alignment:
| Q |
1 |
atgcgtaaaccttctttacacaatcttttaaattgtcaatttagtaattatatatcatagtaggttgttcaaagctagtcttagatcataatatttagat |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34514147 |
atgcgtaaaccttctttacacaatcctttaaattgtcaatttagtaattatatatcatagtagggtgttcaaagctagtcttagatcataatatttagat |
34514246 |
T |
|
| Q |
101 |
aaacaatctgaattgtatcgcaaaattcaacatcattatatatcatagtaggcatctttcttgccatgtaatgtgaaatcattcgtgagtttcaattccg |
200 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34514247 |
aaaccatctgaattgtatcgcaaaatttaacatcattatatatcatagtaggcatctttcttgccatgtaatgtgaaatcattcgtgagtttcaattccg |
34514346 |
T |
|
| Q |
201 |
ttacgtagaaa |
211 |
Q |
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||||||||||| |
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| T |
34514347 |
ttacgtagaaa |
34514357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 34486326 - 34486458
Alignment:
| Q |
1 |
atgcgtaaaccttctttacacaatcttttaaattgtcaatttagtaattatatatcatagtaggtt-gttcaaagctagtcttagatcataatatttaga |
99 |
Q |
| |
|
|||||||||||| | || | |||| ||| |||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||| |
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| T |
34486326 |
atgcgtaaacctcttgtatataatcctttgaattttcaatttagtaattatgtatcatagtaggttagttcaaagctagtcttagatcatgagatttaga |
34486425 |
T |
|
| Q |
100 |
taaacaatctgaattgtatcgcaaaattcaaca |
132 |
Q |
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||||| |||||||||||||| |||||||||||| |
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|
| T |
34486426 |
taaaccatctgaattgtatcacaaaattcaaca |
34486458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 132
Target Start/End: Original strand, 27615641 - 27615752
Alignment:
| Q |
22 |
aatcttttaaattgtcaatttagtaattatatatcatagtaggtt-gttcaaagctagtcttagatcataatatttagataaacaatctgaattgtatcg |
120 |
Q |
| |
|
|||| |||||||| |||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||| | |||||||||||| |||||||||||||| |
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| T |
27615641 |
aatcctttaaattttcaaattagtaattatgtatcatagtaggttagttcaaagctagtcttaaatcatgagatttagataaaccatctgaattgtatca |
27615740 |
T |
|
| Q |
121 |
caaaattcaaca |
132 |
Q |
| |
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|||||||||||| |
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|
| T |
27615741 |
caaaattcaaca |
27615752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 34504735 - 34504839
Alignment:
| Q |
29 |
taaattgtcaatttagtaattatatatcatagtaggtt-gttcaaagctagtcttagatcataatatttagataaacaatctgaattgtatcgcaaaatt |
127 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||||||||| ||||||||||||||||| |||| | |||||||||||| |||||||||||||| ||||||| |
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| T |
34504735 |
taaattttcaaattagtaattatgtatcatagtaggttagttcaaagctagtcttacttcatgagatttagataaaccatctgaattgtatcacaaaatt |
34504834 |
T |
|
| Q |
128 |
caaca |
132 |
Q |
| |
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||||| |
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|
| T |
34504835 |
caaca |
34504839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 34487028 - 34487070
Alignment:
| Q |
181 |
attcgtgagtttcaattccgttacgtagaaagtatacatcgtt |
223 |
Q |
| |
|
||||||||||||||| |||| |||||||||| ||||||||||| |
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|
| T |
34487028 |
attcgtgagtttcaaatccgctacgtagaaattatacatcgtt |
34487070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 34477161 - 34477249
Alignment:
| Q |
27 |
tttaaattgtcaatttagtaattatatatcatagtaggtt-gttcaaagctagtcttagatcataatatttagataaacaatctgaattg |
115 |
Q |
| |
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|||||| ||||||| ||||||||||| || |||| ||||| | || |||||| |||||||||| ||||||||| |||| |||||||||| |
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| T |
34477161 |
tttaaactgtcaatatagtaattata-ataatagcaggttactccatagctagacttagatcatgatatttagagaaaccatctgaattg |
34477249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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