View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_110 (Length: 242)
Name: NF7721_low_110
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_110 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 4474629 - 4474415
Alignment:
| Q |
20 |
atgggagcctttccacttttcccaccaatttccaaatgtagcacaaaagatagatcaaaccaaacagtggcatccgacttagacggcacccttctcgtgt |
119 |
Q |
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| T |
4474629 |
atgggagcctttccacttttcccaccaatttccaaatgtagcacaaaagatagatcaaaccaaaccgtggcatccgacttagacggcacccttctcatgt |
4474530 |
T |
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| Q |
120 |
cgcgaagtgcatttccatactacatgctcgtcgcactcgaagctggaagcattctaagagctttaattctcttatccttagtccctttcgtatattttac |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4474529 |
cgcgaagtgcatttccatactacatgctcgtcgcactcgaagctggaagcattctaagagctttaattctcttatccttagtccctttcgtatatttcac |
4474430 |
T |
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| Q |
220 |
atacctattcatctc |
234 |
Q |
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||||||||| |||| |
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| T |
4474429 |
gtacctattcgtctc |
4474415 |
T |
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