View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_115 (Length: 240)
Name: NF7721_low_115
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_115 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 46737184 - 46737351
Alignment:
| Q |
12 |
gaatatgttgcactagcctccaccaatctgtcaacactgtattaggatcaagaatattttcagctaccacctttgcttctaagagcaactcaatcttata |
111 |
Q |
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| T |
46737184 |
gaatatgttgcactagcctccaccaatctgtctacactgtattaggatcaagaatattttcagctaccacctttgcttctaagagcaactcaatcttata |
46737283 |
T |
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| Q |
112 |
tcctttgctataggttaattttaaacctacgaacgcaccccatatctcagccatataagcactacatc |
179 |
Q |
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| T |
46737284 |
tcctttgctataggttaattttaaacctacgaacgcaccccatatctcagccatataagcaccacatc |
46737351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 46737412 - 46737456
Alignment:
| Q |
175 |
acatcctgctcgcctatcttcttcccggaggaggtggtcatctaa |
219 |
Q |
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| T |
46737412 |
acatcctgctcgcctaccttcttcccggaggaggtggtcatctaa |
46737456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 1790159 - 1790204
Alignment:
| Q |
63 |
gaatattttcagctaccacctttgcttctaagagcaactcaatctt |
108 |
Q |
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| T |
1790159 |
gaatattttcaactaccacctttgtgtctaagtgcaactcaatctt |
1790204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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