View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7721_low_119 (Length: 233)

Name: NF7721_low_119
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7721_low_119
NF7721_low_119
[»] chr5 (9 HSPs)
chr5 (2-215)||(29508113-29508326)
chr5 (2-86)||(29507609-29507693)
chr5 (2-86)||(29507681-29507765)
chr5 (2-86)||(29507897-29507981)
chr5 (2-86)||(29507825-29507909)
chr5 (2-86)||(29508041-29508125)
chr5 (2-86)||(29507753-29507837)
chr5 (2-86)||(29507969-29508053)
chr5 (25-86)||(29507560-29507621)
[»] scaffold0017 (3 HSPs)
scaffold0017 (92-213)||(173641-173762)
scaffold0017 (92-215)||(168630-168753)
scaffold0017 (7-86)||(173903-173982)
[»] scaffold0061 (1 HSPs)
scaffold0061 (92-215)||(30039-30162)
[»] chr1 (7 HSPs)
chr1 (136-207)||(44611539-44611610)
chr1 (132-215)||(35898823-35898906)
chr1 (133-207)||(11544971-11545045)
chr1 (7-86)||(44612099-44612178)
chr1 (7-86)||(11544697-11544776)
chr1 (7-86)||(44144890-44144969)
chr1 (48-86)||(44785756-44785794)
[»] chr2 (4 HSPs)
chr2 (7-86)||(29228552-29228631)
chr2 (7-86)||(29341851-29341930)
chr2 (133-180)||(29228813-29228860)
chr2 (133-180)||(29342112-29342159)
[»] chr3 (5 HSPs)
chr3 (134-213)||(26727314-26727393)
chr3 (142-207)||(8341721-8341786)
chr3 (29-86)||(26727567-26727624)
chr3 (49-86)||(8333058-8333095)
chr3 (49-86)||(8341971-8342008)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 29508113 - 29508326
Alignment:
Q  2 agaggtttccaagttggaagggaattgctccaatgagttcattaccgctgagatcaaggtgttgcaattgtgagagatttccaagctgaattattgaagg 101  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29508113 agagatttccaagttggaagggaattgctccaatgagttcattacctctgagatcaaggtgttgcaattgtgagagatttccaagctgaattattgaagg 29508212  T
Q  102 actaatttcaccactcaaatggcatgtaaatgaaccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcag 201  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29508213 actaatttcaccactcaaattgcatgtaaacgaaccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcag 29508312  T
Q  202 caatcttcatttgg 215  Q
    ||||||||||||||    
T  29508313 caatcttcatttgg 29508326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 29507609 - 29507693
Alignment:
Q  2 agaggtttccaagttggaagggaattgctccaatgagttcattaccgctgagatcaaggtgttgcaattgtgagagatttccaag 86  Q
    |||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  29507609 agagatttccaagttggaagggaattgctccaatgagttcattttcgctgagatcaaggtgttgcaattgtgagagatttccaag 29507693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 29507681 - 29507765
Alignment:
Q  2 agaggtttccaagttggaagggaattgctccaatgagttcattaccgctgagatcaaggtgttgcaattgtgagagatttccaag 86  Q
    |||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  29507681 agagatttccaagttggaagggaattgctccaatgagttcatttctgctgagatcaaggtgttgcaattgtgagagatttccaag 29507765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 29507897 - 29507981
Alignment:
Q  2 agaggtttccaagttggaagggaattgctccaatgagttcattaccgctgagatcaaggtgttgcaattgtgagagatttccaag 86  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  29507897 agagatttccaagttggaagggaattgctccaatgagttcatttccgccgagatcaaggtgttgcaattgtgagagatttccaag 29507981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 29507825 - 29507909
Alignment:
Q  2 agaggtttccaagttggaagggaattgctccaatgagttcattaccgctgagatcaaggtgttgcaattgtgagagatttccaag 86  Q
    |||| ||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  29507825 agagatttccaagttggaagggaattgctccaatgagttcattttcgccgagatcaaggtgttgcaattgtgagagatttccaag 29507909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 29508041 - 29508125
Alignment:
Q  2 agaggtttccaagttggaagggaattgctccaatgagttcattaccgctgagatcaaggtgttgcaattgtgagagatttccaag 86  Q
    |||| ||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  29508041 agagatttccaagttggaagggaattgctccaatgagttcattttcgccgagatcaaggtgttgcaattgtgagagatttccaag 29508125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 29507753 - 29507837
Alignment:
Q  2 agaggtttccaagttggaagggaattgctccaatgagttcattaccgctgagatcaaggtgttgcaattgtgagagatttccaag 86  Q
    |||| ||||||||||||||||||||| ||||||||||||||||   |||||||||||| ||||||||||||||||||||||||||    
T  29507753 agagatttccaagttggaagggaattcctccaatgagttcattgtagctgagatcaagatgttgcaattgtgagagatttccaag 29507837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 29507969 - 29508053
Alignment:
Q  2 agaggtttccaagttggaagggaattgctccaatgagttcattaccgctgagatcaaggtgttgcaattgtgagagatttccaag 86  Q
    |||| ||||||||||||||||||||| ||||||||||||||||   |||||||||||| ||||||||||||||||||||||||||    
T  29507969 agagatttccaagttggaagggaattcctccaatgagttcattgtagctgagatcaagatgttgcaattgtgagagatttccaag 29508053  T

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Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 29507560 - 29507621
Alignment:
Q  25 attgctccaatgagttcattaccgctgagatcaaggtgttgcaattgtgagagatttccaag 86  Q
    ||||||||||| ||||||||   |||||||||||||||||| ||||||||||||||||||||    
T  29507560 attgctccaattagttcattgtagctgagatcaaggtgttgtaattgtgagagatttccaag 29507621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 173762 - 173641
Alignment:
Q  92 ttattgaaggactaatttcaccactcaaatggcatgtaaatgaaccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactccctt 191  Q
    ||||||||||| | ||||||||||||||||| | |||    || |||||||||||||| |||||||||||||| ||||   |||||||| ||||||||||    
T  173762 ttattgaaggattgatttcaccactcaaatgacgtgtttccgagccatgcagatcaagactttgaacataaccagtttcgatgttgcattgaactccctt 173663  T
Q  192 ccatttgcagcaatcttcattt 213  Q
    ||||||||||||||||||||||    
T  173662 ccatttgcagcaatcttcattt 173641  T

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Target: scaffold0017; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 168753 - 168630
Alignment:
Q  92 ttattgaaggactaatttcaccactcaaatggcatgtaaatgaaccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactccctt 191  Q
    ||||||||||| | |||||||||||||||   | |||    |||||||||||||||||  ||| ||||||||| ||||||||||||||| ||||||||||    
T  168753 ttattgaaggattgatttcaccactcaaacaacgtgtttccgaaccatgcagatcaagcttttcaacataaccggtttgattgttgcattgaactccctt 168654  T
Q  192 ccatttgcagcaatcttcatttgg 215  Q
    |||||||||||||||| |||||||    
T  168653 ccatttgcagcaatctgcatttgg 168630  T

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Target: scaffold0017; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 173982 - 173903
Alignment:
Q  7 tttccaagttggaagggaattgctccaatgagttcattaccgctgagatcaaggtgttgcaattgtgagagatttccaag 86  Q
    ||||| |||||||| || ||| ||||||||||||||||   ||| |||||||||| |  ||||||||| |||||||||||    
T  173982 tttccgagttggaaagggatttctccaatgagttcattgtagctaagatcaaggtatcacaattgtgatagatttccaag 173903  T

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Target: scaffold0061 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 30039 - 30162
Alignment:
Q  92 ttattgaaggactaatttcaccactcaaatggcatgtaaatgaaccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactccctt 191  Q
    ||||||||||| | |||||||||||||||   | |||    |||||||||||||||||  ||| ||||||||| ||||||||||||||| ||||||||||    
T  30039 ttattgaaggattgatttcaccactcaaacaacgtgtttccgaaccatgcagatcaagcttttcaacataaccggtttgattgttgcattgaactccctt 30138  T
Q  192 ccatttgcagcaatcttcatttgg 215  Q
    |||||||||||||||| |||||||    
T  30139 ccatttgcagcaatctgcatttgg 30162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 44611610 - 44611539
Alignment:
Q  136 ccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatct 207  Q
    |||||||||||||| |||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||    
T  44611610 ccatgcagatcaagactttgaacataaccagtttgaatgttgcattgaactcccttccatttgcagcaatct 44611539  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 35898906 - 35898823
Alignment:
Q  132 tgaaccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgg 215  Q
    ||||||||||| |||||| ||||||| |||||| ||||| ||||||||| ||||||| |||||||||||||||||| |||||||    
T  35898906 tgaaccatgcaaatcaagactttgaatataaccagtttggttgttgcattgaactcctttccatttgcagcaatctgcatttgg 35898823  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 207
Target Start/End: Original strand, 11544971 - 11545045
Alignment:
Q  133 gaaccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatct 207  Q
    |||||||||| ||| || |||||||||||||||||||| |||||||| |||||||| |||||||| || ||||||    
T  11544971 gaaccatgcaaatcgagactttgaacataacctgtttggttgttgcaacgaactcctttccatttacaacaatct 11545045  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 44612178 - 44612099
Alignment:
Q  7 tttccaagttggaagggaattgctccaatgagttcattaccgctgagatcaaggtgttgcaattgtgagagatttccaag 86  Q
    |||||||||||||| || ||| ||||| ||||||||||  | || |||||||||||| |||||||||||||||| |||||    
T  44612178 tttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaag 44612099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 11544697 - 11544776
Alignment:
Q  7 tttccaagttggaagggaattgctccaatgagttcattaccgctgagatcaaggtgttgcaattgtgagagatttccaag 86  Q
    ||||| |||||||| |||||| ||||||||||||||||   ||| ||||||||||||  ||| ||||||||||| |||||    
T  11544697 tttccgagttggaaaggaatttctccaatgagttcattgtagctaagatcaaggtgtctcaactgtgagagattgccaag 11544776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 44144969 - 44144890
Alignment:
Q  7 tttccaagttggaagggaattgctccaatgagttcattaccgctgagatcaaggtgttgcaattgtgagagatttccaag 86  Q
    ||||| |||||||| || ||| ||||||||||||||||   ||| | |||||||||| ||||| |||||||||| |||||    
T  44144969 tttccgagttggaaagggatttctccaatgagttcattgtagctaaaatcaaggtgtcgcaatcgtgagagattcccaag 44144890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 44785756 - 44785794
Alignment:
Q  48 gctgagatcaaggtgttgcaattgtgagagatttccaag 86  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  44785756 gctgagatcaaggtgtcgcaattgtgagagattcccaag 44785794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 29228552 - 29228631
Alignment:
Q  7 tttccaagttggaagggaattgctccaatgagttcattaccgctgagatcaaggtgttgcaattgtgagagatttccaag 86  Q
    ||||| |||||||| || ||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||    
T  29228552 tttccgagttggaaagggattgctccaatgagttcattgttgctaagatcaaggtgttgcaattgtgagagatttccaag 29228631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 29341851 - 29341930
Alignment:
Q  7 tttccaagttggaagggaattgctccaatgagttcattaccgctgagatcaaggtgttgcaattgtgagagatttccaag 86  Q
    ||||| |||||||| || ||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||    
T  29341851 tttccgagttggaaagggattgctccaatgagttcattgttgctaagatcaaggtgttgcaattgtgagagatttccaag 29341930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 29228813 - 29228860
Alignment:
Q  133 gaaccatgcagatcaagtctttgaacataacctgtttgattgttgcat 180  Q
    |||| |||||||||||| |||||||||||||| ||||| |||||||||    
T  29228813 gaacgatgcagatcaagactttgaacataaccagtttggttgttgcat 29228860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 29342112 - 29342159
Alignment:
Q  133 gaaccatgcagatcaagtctttgaacataacctgtttgattgttgcat 180  Q
    |||| |||||||||||| |||||||||||||| ||||| |||||||||    
T  29342112 gaacgatgcagatcaagactttgaacataaccagtttggttgttgcat 29342159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 26727393 - 26727314
Alignment:
Q  134 aaccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcattt 213  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||   |||||| ||||||||||||||||| |||||    
T  26727393 aaccatgcaaatcaagtctttgaacataacctgtttcgttgttgcataagactcccatccatttgcagcaatctgcattt 26727314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 8341786 - 8341721
Alignment:
Q  142 agatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatct 207  Q
    ||||||||  ||| ||||||||| ||||||||||||||| ||| ||| ||||||||||||||||||    
T  8341786 agatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatct 8341721  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 26727624 - 26727567
Alignment:
Q  29 ctccaatgagttcattaccgctgagatcaaggtgttgcaattgtgagagatttccaag 86  Q
    ||||||||||||||||   ||||||||||||||||||||| |||||||| ||||||||    
T  26727624 ctccaatgagttcattgtggctgagatcaaggtgttgcaactgtgagagttttccaag 26727567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 8333095 - 8333058
Alignment:
Q  49 ctgagatcaaggtgttgcaattgtgagagatttccaag 86  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  8333095 ctgagattaaggtgttgcaattgtgagagattcccaag 8333058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 8342008 - 8341971
Alignment:
Q  49 ctgagatcaaggtgttgcaattgtgagagatttccaag 86  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  8342008 ctgagattaaggtgttgcaattgtgagagattcccaag 8341971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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