View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_12 (Length: 580)
Name: NF7721_low_12
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 543; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 16 - 562
Target Start/End: Original strand, 42205032 - 42205578
Alignment:
| Q |
16 |
acatcacacgatcgaatttctgtagaaaggcatctaatggaggcatctcagatggctgtctacttattccttttgatatatttgaggcatcaactgcttt |
115 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205032 |
acatcacacgatcgaatgtctgtagaaaggcatctaatggaggcatctcagatggctgtctacttattccttttgatatatttgaggcatcaactgcttt |
42205131 |
T |
|
| Q |
116 |
ccgcgatttaacttcattaggaaacaagaattgcactgcgtcccaaagagctatgttcacagagtaggggaatctattactgcaaaaggaaaaaacataa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205132 |
ccgcgatttaacttcattaggaaacaagaattgcactgcgtcccaaagagctatgttcacagagtaggggaatctattactgcaaaaggaaaaaacataa |
42205231 |
T |
|
| Q |
216 |
caaagtcaaaagacaacaatacatatttgattttgaaaaattaattacttcatgaataccttatccattccttgcataaagggcacctttgtccagccat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205232 |
caaagtcaaaagacaacaatacatatttgattttgaaaaattaattacttcatgaataccttatccattccttgcataaagggcacctttgtccagccat |
42205331 |
T |
|
| Q |
316 |
atatatggaagattgcaaacactttttgcaaaaactacaaaagtgtatattcttaattagaaaagttagaagttgatgcacaataaactaaattgagtat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205332 |
atatatggaagattgcaaacactttttgcaaaaactacaaaagtgtatattcttaattagaaaagttagaagttgatgcacaataaactaaattgagtat |
42205431 |
T |
|
| Q |
416 |
gagtcatgacaaatgtctaacatagatataaaatcaacaatatgatacttgaacattaatcgttttcatacactcattcaacaatgatcattatttttct |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205432 |
gagtcatgacaaatgtctaacatagatataaaatcaacaatatgatacttgaacattaatcgttttcatacactcattcaacaatgatcattatttttct |
42205531 |
T |
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| Q |
516 |
atctctcttttcctatcacatgattaacatatcatatctatcaaagt |
562 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205532 |
atctctcttttcctatcacatgattaacatatcatatctatcaaagt |
42205578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 16 - 562
Target Start/End: Original strand, 42213900 - 42214446
Alignment:
| Q |
16 |
acatcacacgatcgaatttctgtagaaaggcatctaatggaggcatctcagatggctgtctacttattccttttgatatatttgaggcatcaactgcttt |
115 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213900 |
acatcacacgatcgaatgtctgtagaaaggcatctaatggaggcatctcagatggctgtctacttattccttttgatatatttgaggcatcaactgcttt |
42213999 |
T |
|
| Q |
116 |
ccgcgatttaacttcattaggaaacaagaattgcactgcgtcccaaagagctatgttcacagagtaggggaatctattactgcaaaaggaaaaaacataa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214000 |
ccgcgatttaacttcattaggaaacaagaattgcactgcgtcccaaagagctatgttcacagagtaggggaatctattactgcaaaaggaaaaaacataa |
42214099 |
T |
|
| Q |
216 |
caaagtcaaaagacaacaatacatatttgattttgaaaaattaattacttcatgaataccttatccattccttgcataaagggcacctttgtccagccat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214100 |
caaagtcaaaagacaacaatacatatttgattttgaaaaattaattacttcatgaataccttatccattccttgcataaagggcacctttgtccagccat |
42214199 |
T |
|
| Q |
316 |
atatatggaagattgcaaacactttttgcaaaaactacaaaagtgtatattcttaattagaaaagttagaagttgatgcacaataaactaaattgagtat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214200 |
atatatggaagattgcaaacactttttgcaaaaactacaaaagtgtatattcttaattagaaaagttagaagttgatgcacaataaactaaattgagtat |
42214299 |
T |
|
| Q |
416 |
gagtcatgacaaatgtctaacatagatataaaatcaacaatatgatacttgaacattaatcgttttcatacactcattcaacaatgatcattatttttct |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214300 |
gagtcatgacaaatgtctaacatagatataaaatcaacaatatgatacttgaacattaatcgttttcatacactcattcaacaatgatcattatttttct |
42214399 |
T |
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| Q |
516 |
atctctcttttcctatcacatgattaacatatcatatctatcaaagt |
562 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214400 |
atctctcttttcctatcacatgattaacatatcatatctatcaaagt |
42214446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 516 - 558
Target Start/End: Complemental strand, 31720948 - 31720906
Alignment:
| Q |
516 |
atctctcttttcctatcacatgattaacatatcatatctatca |
558 |
Q |
| |
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|||||||||| |||||||||| |||||||||||| |||||||| |
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| T |
31720948 |
atctctctttacctatcacatcattaacatatcacatctatca |
31720906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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