View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7721_low_120 (Length: 233)

Name: NF7721_low_120
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7721_low_120
NF7721_low_120
[»] chr5 (3 HSPs)
chr5 (7-193)||(26381189-26381375)
chr5 (184-233)||(26380120-26380169)
chr5 (184-220)||(36429723-36429759)
[»] chr8 (1 HSPs)
chr8 (184-227)||(20111934-20111977)
[»] chr4 (2 HSPs)
chr4 (184-227)||(27455354-27455397)
chr4 (184-227)||(49681712-49681755)
[»] scaffold0102 (1 HSPs)
scaffold0102 (184-220)||(32793-32829)
[»] chr6 (1 HSPs)
chr6 (184-220)||(30709934-30709970)
[»] chr3 (1 HSPs)
chr3 (184-220)||(47471134-47471170)
[»] chr2 (1 HSPs)
chr2 (184-220)||(10256138-10256174)
[»] chr1 (1 HSPs)
chr1 (185-220)||(47445431-47445466)
[»] chr7 (1 HSPs)
chr7 (186-220)||(36067756-36067790)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 7 - 193
Target Start/End: Original strand, 26381189 - 26381375
Alignment:
Q  7 gatggacatcaaaatttgatgaactttggttcatgtttgcctgagctacagagttatatgtttcatatggcaaaggatcagaatggtggccgttttctgc 106  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26381189 gatgtacaacaaaatttgatgaactttggttcatgtttgcctgagctacagagttatatgtttcatatggcaaaggatcagaatggtggccgttttctgc 26381288  T
Q  107 agggtatggttgagaaaggaactgttgaggatatggaaatggtgtttaatggagttatagataatgttgtggagcttatgatggacc 193  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26381289 agggaatggttgagaaaggaactgttgaagatatggaaatggtgtttaatggagttattgataatgttgtggagcttatgatggacc 26381375  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 26380169 - 26380120
Alignment:
Q  184 atgatggaccagtaacatcatgagaatgagaagaaccattgttgctgttg 233  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26380169 atgatggaacagtaacatcatgagaatgagaagaaccattgttgctgttg 26380120  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 36429759 - 36429723
Alignment:
Q  184 atgatggaccagtaacatcatgagaatgagaagaacc 220  Q
    |||||||| ||||||||||||||||||||||||||||    
T  36429759 atgatggaacagtaacatcatgagaatgagaagaacc 36429723  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 20111934 - 20111977
Alignment:
Q  184 atgatggaccagtaacatcatgagaatgagaagaaccattgttg 227  Q
    |||||||| |||||||||||||||||||||||||||| ||||||    
T  20111934 atgatggaacagtaacatcatgagaatgagaagaaccgttgttg 20111977  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 27455397 - 27455354
Alignment:
Q  184 atgatggaccagtaacatcatgagaatgagaagaaccattgttg 227  Q
    |||||||| |||||||||||||||||||||||||||| ||||||    
T  27455397 atgatggaacagtaacatcatgagaatgagaagaaccgttgttg 27455354  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 49681712 - 49681755
Alignment:
Q  184 atgatggaccagtaacatcatgagaatgagaagaaccattgttg 227  Q
    |||||||| |||||||||||||||||||||||||| | ||||||    
T  49681712 atgatggaacagtaacatcatgagaatgagaagaatcgttgttg 49681755  T

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Target: scaffold0102 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 32829 - 32793
Alignment:
Q  184 atgatggaccagtaacatcatgagaatgagaagaacc 220  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32829 atgatggaacagtaacatcatgagaatgagaagaacc 32793  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 30709970 - 30709934
Alignment:
Q  184 atgatggaccagtaacatcatgagaatgagaagaacc 220  Q
    |||||||| ||||||||||||||||||||||||||||    
T  30709970 atgatggaacagtaacatcatgagaatgagaagaacc 30709934  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 47471170 - 47471134
Alignment:
Q  184 atgatggaccagtaacatcatgagaatgagaagaacc 220  Q
    |||||||| ||||||||||||||||||||||||||||    
T  47471170 atgatggaacagtaacatcatgagaatgagaagaacc 47471134  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 10256174 - 10256138
Alignment:
Q  184 atgatggaccagtaacatcatgagaatgagaagaacc 220  Q
    |||||||| ||||||||||||||||||||||||||||    
T  10256174 atgatggaacagtaacatcatgagaatgagaagaacc 10256138  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 47445431 - 47445466
Alignment:
Q  185 tgatggaccagtaacatcatgagaatgagaagaacc 220  Q
    ||||||| ||||||||||||||||||||||||||||    
T  47445431 tgatggaacagtaacatcatgagaatgagaagaacc 47445466  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 36067790 - 36067756
Alignment:
Q  186 gatggaccagtaacatcatgagaatgagaagaacc 220  Q
    |||||| ||||||||||||||||||||||||||||    
T  36067790 gatggaacagtaacatcatgagaatgagaagaacc 36067756  T

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