View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7721_low_13 (Length: 573)

Name: NF7721_low_13
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7721_low_13
NF7721_low_13
[»] chr6 (11 HSPs)
chr6 (15-557)||(11673359-11673910)
chr6 (172-546)||(11663170-11663544)
chr6 (172-546)||(11631504-11631878)
chr6 (139-546)||(11710016-11710423)
chr6 (143-543)||(11618357-11618757)
chr6 (404-546)||(11739571-11739713)
chr6 (394-546)||(12093789-12093941)
chr6 (172-231)||(11756309-11756368)
chr6 (172-231)||(12093567-12093626)
chr6 (172-228)||(11739339-11739395)
chr6 (394-546)||(11755994-11756146)
[»] scaffold0019 (1 HSPs)
scaffold0019 (158-536)||(8439-8817)
[»] scaffold0196 (1 HSPs)
scaffold0196 (139-546)||(12706-13113)
[»] chr4 (3 HSPs)
chr4 (456-546)||(38151443-38151533)
chr4 (172-235)||(31291063-31291126)
chr4 (158-228)||(27957853-27957923)
[»] chr1 (2 HSPs)
chr1 (406-531)||(44811770-44811895)
chr1 (160-264)||(44812031-44812135)


Alignment Details
Target: chr6 (Bit Score: 455; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 15 - 557
Target Start/End: Original strand, 11673359 - 11673910
Alignment:
Q  15 ggacatcatggtgtatttgtgggaaaagacatctattgtgttgaatttgggacatcaaaaca-------------aattataaccaataagagattacac 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  11673359 ggacatcatggtgtatttgtgggaaaagacatctattgtgttgaatttgggacatcaaaacaggaatattatttaaattataaccaataagagattacac 11673458  T
Q  102 gatttagcagtttattgtatgattggtatgggaatatataaaaacttacatctccttttgtgttagaaatttctccaagaattgttgctaagagggttga 201  Q
    ||||||| ||||||||||||||| ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11673459 gatttagtagtttattgtatgatcggtatgggaata----aaaacttacatctccttttgtgttagaaatttctccaagaattgttgctaagatggttga 11673554  T
Q  202 ttttcctgagccaacttcgccacaaatagccaccctttgtccatgtttaacgtccaaatttatgcttcttagtgttggctttattgcattaccttcccat 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11673555 ttttcctgagccaacttcgccacaaatagccaccctttgtccatgtttaacgtccaaatttatgcttcttagtgttggctttattgcattactttcccat 11673654  T
Q  302 gaaaagtcaaccgatttgataaagactgagcctttaaggttatcatttaagcattggttcttaaaattttcactttgcagttcttgtgcttggagaaaat 401  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11673655 gaaaagtcagccgattcgataaagactgagcctttaaggttatcatttaagcatcggttcttaaaattttcactttgcagttcttgtgcttggagaaaat 11673754  T
Q  402 taacaatcctagcaaatgcaacttttgcttgaataatcaccgcaataacatctggaatacctgtaattggatcttgaacaaggcgcaatgttgccacaaa 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  11673755 taacaatcctagcaaatgcaacttttgcttgaataatcaccgcaataacatctggaatacctgtaataggatcttgaacaaggcgtaatgttgccacaaa 11673854  T
Q  502 agtgaaaacattacttgcacgcaaaggaactttcaagaagtaacagaccagaaaag 557  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11673855 agtgaaaacattacttgcatgcaaaggaactttcaagaagtaacagaccagaaaag 11673910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 172 - 546
Target Start/End: Complemental strand, 11663544 - 11663170
Alignment:
Q  172 ttctccaagaattgttgctaagagggttgattttcctgagccaacttcgccacaaatagccaccctttgtccatgtttaacgtccaaatttatgcttctt 271  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| ||| || ||||||||||||||||| |||||    
T  11663544 ttctccgagaattgttgctaagagggttgattttcctgagccaacttctccacagatagccaccttttgcccacgtctaacgtccaaatttatgtttctt 11663445  T
Q  272 agtgttggctttattgcattaccttcccatgaaaagtcaaccgatttgataaagactgagcctttaaggttatcatttaagcattggttcttaaaatttt 371  Q
    |||||||| |||  ||| ||||||||||||||||||||  | ||||| || || ||||||||||| |||||||||||   |||   |||||| |||||||    
T  11663444 agtgttggatttgatgccttaccttcccatgaaaagtcggctgattttattaaaactgagcctttgaggttatcattattgcacatgttcttcaaatttt 11663345  T
Q  372 cactttgcagttcttgtgcttggagaaaattaacaatcctagcaaatgcaacttttgcttgaataatcaccgcaataacatctggaatacctgtaattgg 471  Q
    |||| ||||||||| | || |  ||||||||   ||||| || |||||| ||||| |||||||||||||| |||| ||||||||| ||  ||  ||||||    
T  11663344 cactctgcagttctggagcctcaagaaaattttgaatccgagaaaatgcgactttggcttgaataatcacagcaacaacatctgggattgctagaattgg 11663245  T
Q  472 atcttgaacaaggcgcaatgttgccacaaaagtgaaaacattacttgcacgcaaaggaactttcaagaagtaaca 546  Q
     |||||||||||||| || ||||| || |||||||||||||| |||||||||||||||||||||| |||||||||    
T  11663244 ctcttgaacaaggcgtaaagttgctacgaaagtgaaaacattgcttgcacgcaaaggaactttcaggaagtaaca 11663170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 172 - 546
Target Start/End: Original strand, 11631504 - 11631878
Alignment:
Q  172 ttctccaagaattgttgctaagagggttgattttcctgagccaacttcgccacaaatagccaccctttgtccatgtttaacgtccaaatttatgcttctt 271  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||  |||| || || ||||| || ||||||||| | |      
T  11631504 ttctccaagaattgttgctaagagggttgatttgccggagccaacttctccacagatagccactttttggccgtgcttaacctctaaatttatgttccgc 11631603  T
Q  272 agtgttggctttattgcattaccttcccatgaaaagtcaaccgatttgataaagactgagcctttaaggttatcatttaagcattggttcttaaaatttt 371  Q
    || |||||||||  ||||||||||||||||||||||| | | ||||| ||  | | ||| ||||| ||||| ||||  ||||| | |||||| |||||||    
T  11631604 agggttggctttgatgcattaccttcccatgaaaagttagcagattttattgaaattgatcctttgaggttgtcatcaaagcactcgttcttcaaatttt 11631703  T
Q  372 cactttgcagttcttgtgcttggagaaaattaacaatcctagcaaatgcaacttttgcttgaataatcaccgcaataacatctggaatacctgtaattgg 471  Q
    |||| ||||||||| |||| |  || ||| ||||||| | |||||||||||||||||| ||||| ||||||||||| ||||||||||||| |||||||||    
T  11631704 cactctgcagttctggtgcatcaaggaaagtaacaattcgagcaaatgcaacttttgcctgaatgatcaccgcaatgacatctggaatacttgtaattgg 11631803  T
Q  472 atcttgaacaaggcgcaatgttgccacaaaagtgaaaacattacttgcacgcaaaggaactttcaagaagtaaca 546  Q
     ||||||||||||||||  |||||||||||||||||||||||||||||| | |||||||  | ||||||||||||    
T  11631804 ctcttgaacaaggcgcacagttgccacaaaagtgaaaacattacttgcatgtaaaggaatatccaagaagtaaca 11631878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 139 - 546
Target Start/End: Original strand, 11710016 - 11710423
Alignment:
Q  139 ataaaaacttacatctccttttgtgttagaaatttctccaagaattgttgctaagagggttgattttcctgagccaacttcgccacaaatagccaccctt 238  Q
    |||||| ||||||  ||| ||||| |||| ||  |||||||||||||||||||| |  ||||||||||||||||||||||| ||||||||||||||| ||    
T  11710016 ataaaagcttacagttccctttgtattaggaacctctccaagaattgttgctaataccgttgattttcctgagccaacttctccacaaatagccaccttt 11710115  T
Q  239 tgtccatgtttaacgtccaaatttatgcttcttagtgttggctttattgcattaccttcccatgaaaagtcaaccgatttgataaagactgagcctttaa 338  Q
    || ||| || |||| ||||| |||||| |||||||||||||||||  ||||||||||||||||||||||||  | ||||| || || ||||||||  | |    
T  11710116 tgcccacgtctaacatccaagtttatgtttcttagtgttggctttgatgcattaccttcccatgaaaagtcggctgattttattaaaactgagcccctga 11710215  T
Q  339 ggttatcatttaagcattggttcttaaaattttcactttgcagttcttgtgcttggagaaaattaacaatcctagcaaatgcaacttttgcttgaataat 438  Q
    |||| |||||  ||     ||| || ||| ||||||| |  |||||| |||| |  || ||||||   |||| |||||||||||||||||||||||| ||    
T  11710216 ggttgtcattacagatgatgttattgaaactttcactctttagttctggtgcctcaaggaaattacatatccgagcaaatgcaacttttgcttgaatgat 11710315  T
Q  439 caccgcaataacatctggaatacctgtaattggatcttgaacaaggcgcaatgttgccacaaaagtgaaaacattacttgcacgcaaaggaactttcaag 538  Q
    ||||| ||||||||| || ||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||| ||| | |    
T  11710316 caccgtaataacatccggtatacctgtaattggcacttgaacaaggcctaatgttgccacaaaagtgaaaacattacttgcatgcaaaggaattttaagg 11710415  T
Q  539 aagtaaca 546  Q
    ||||||||    
T  11710416 aagtaaca 11710423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 143 - 543
Target Start/End: Complemental strand, 11618757 - 11618357
Alignment:
Q  143 aaacttacatctccttttgtgttagaaatttctccaagaattgttgctaagagggttgattttcctgagccaacttcgccacaaatagccaccctttgtc 242  Q
    |||||||||  ||| ||||| ||||||| ||||||||||||||||||||||| |||||||||||| || |||||||| |||||||| |||||| |||| |    
T  11618757 aaacttacagttccctttgttttagaaacttctccaagaattgttgctaagatggttgattttccggaaccaacttctccacaaatggccaccttttgcc 11618658  T
Q  243 catgtttaacgtccaaatttatgcttcttagtgttggctttattgcattaccttcccatgaaaagtcaaccgatttgataaagactgagcctttaaggtt 342  Q
    ||||| |||| || ||||||||| | ||||||| |||||||   |  ||||||||||||||||||||  |  |||| ||  | | || | |||| ||||     
T  11618657 catgtctaacatctaaatttatgttccttagtgatggctttgacgagttaccttcccatgaaaagtcggcacattttattgaaattgtgtctttgaggtc 11618558  T
Q  343 atcatttaagcattggttcttaaaattttcactttgcagttcttgtgcttggagaaaattaacaatcctagcaaatgcaacttttgcttgaataatcacc 442  Q
    ||| || |||||   |||| ||||||||||||| ||||||||| |||| |  || ||||||||||||| ||||||||||||||| || ||||| ||| |     
T  11618557 atctttaaagcacctgttcctaaaattttcactctgcagttctggtgcctcaaggaaattaacaatccgagcaaatgcaactttcgcctgaatgatcgct 11618458  T
Q  443 gcaataacatctggaatacctgtaattggatcttgaacaaggcgcaatgttgccacaaaagtgaaaacattacttgcacgcaaaggaactttcaagaagt 542  Q
    |||||||| ||||| ||   || |||||||||||||||||||||||| ||||| || || ||||||||||||||||||  || |||||  ||||||||||    
T  11618457 gcaataacttctgggatgtttgcaattggatcttgaacaaggcgcaaagttgcgaccaatgtgaaaacattacttgcattcagaggaatcttcaagaagt 11618358  T
Q  543 a 543  Q
    |    
T  11618357 a 11618357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 404 - 546
Target Start/End: Original strand, 11739571 - 11739713
Alignment:
Q  404 acaatcctagcaaatgcaacttttgcttgaataatcaccgcaataacatctggaatacctgtaattggatcttgaacaaggcgcaatgttgccacaaaag 503  Q
    ||||||| || ||||||||  ||||||||||| |||||  |||||||||| || ||   || |||||||||||| | ||| || | |||||||||||| |    
T  11739571 acaatccgagaaaatgcaatatttgcttgaatgatcactccaataacatcagggatggttgaaattggatcttgcataagtcgtattgttgccacaaagg 11739670  T
Q  504 tgaaaacattacttgcacgcaaaggaactttcaagaagtaaca 546  Q
    |||| | |||| | ||| | |||||||| ||||||||||||||    
T  11739671 tgaatatattattcgcatgtaaaggaacattcaagaagtaaca 11739713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 546
Target Start/End: Original strand, 12093789 - 12093941
Alignment:
Q  394 gagaaaattaacaatcctagcaaatgcaacttttgcttgaataatcaccgcaataacatctggaatacctgtaattggatcttgaacaaggcgcaatgtt 493  Q
    |||||| || |||| || || ||| ||||| ||||||||||| |||||  |||||||||||  |||   || ||| |||||||| ||||||||||  |||    
T  12093789 gagaaatttcacaacccgagaaaaagcaacctttgcttgaatgatcactccaataacatctccaatggttgaaataggatcttgcacaaggcgcacggtt 12093888  T
Q  494 gccacaaaagtgaaaacattacttgcacgcaaaggaactttcaagaagtaaca 546  Q
    |  | ||| |||||||||||| ||||| | | |||||||||||||| ||||||    
T  12093889 gtgataaatgtgaaaacattatttgcatggagaggaactttcaagaggtaaca 12093941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 11756368 - 11756309
Alignment:
Q  172 ttctccaagaattgttgctaagagggttgattttcctgagccaacttcgccacaaatagc 231  Q
    |||||| ||||||| |||||| |  ||||||||||||||||||||||| |||||||||||    
T  11756368 ttctccgagaattgctgctaataaagttgattttcctgagccaacttctccacaaatagc 11756309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 12093567 - 12093626
Alignment:
Q  172 ttctccaagaattgttgctaagagggttgattttcctgagccaacttcgccacaaatagc 231  Q
    |||||| ||||||| |||||| |  ||||||||||||||||||||||| |||||||||||    
T  12093567 ttctccgagaattgctgctaataaagttgattttcctgagccaacttctccacaaatagc 12093626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 11739339 - 11739395
Alignment:
Q  172 ttctccaagaattgttgctaagagggttgattttcctgagccaacttcgccacaaat 228  Q
    |||||| ||||| | ||||||||| |||||||| |||||||||||||| ||||||||    
T  11739339 ttctccgagaatcgctgctaagagagttgatttacctgagccaacttctccacaaat 11739395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 546
Target Start/End: Complemental strand, 11756146 - 11755994
Alignment:
Q  394 gagaaaattaacaatcctagcaaatgcaacttttgcttgaataatcaccgcaataacatctggaatacctgtaattggatcttgaacaaggcgcaatgtt 493  Q
    |||||| || |||| || || ||| ||||| ||||||||||| |||||  |||||||||||   ||   || ||| |||||||| ||||||||||  |||    
T  11756146 gagaaatttcacaacccgagaaaaagcaacctttgcttgaatgatcactccaataacatctcctatggttgaaataggatcttgcacaaggcgcacggtt 11756047  T
Q  494 gccacaaaagtgaaaacattacttgcacgcaaaggaactttcaagaagtaaca 546  Q
    |  | ||| |||||||||||| ||||| | | |||||||||||||| ||||||    
T  11756046 gtgataaatgtgaaaacattatttgcatggagaggaactttcaagaggtaaca 11755994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 158 - 536
Target Start/End: Original strand, 8439 - 8817
Alignment:
Q  158 tttgtgttagaaatttctccaagaattgttgctaagagggttgattttcctgagccaacttcgccacaaatagccaccctttgtccatgtttaacgtcca 257  Q
    ||||| || |||| |||||||||||||||||| | ||| ||||||||||||||||||||||| ||||||||||||||| |||| |||||| |||| ||||    
T  8439 tttgtttttgaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctcca 8538  T
Q  258 aatttatgcttcttagtgttggctttattgcattaccttcccatgaaaagtcaaccgatttgataaagactgagcctttaaggttatcatttaagcattg 357  Q
     | ||||| | ||||||||||| |||  |||||||||||||||||||||||||    |||| ||  | | ||||||||||||||||||||| |||||||     
T  8539 tacttatgttccttagtgttggttttgatgcattaccttcccatgaaaagtcagaacattttattgaaattgagcctttaaggttatcattgaagcattt 8638  T
Q  358 gttcttaaaattttcactttgcagttcttgtgcttggagaaaattaacaatcctagcaaatgcaacttttgcttgaataatcaccgcaataacatctgga 457  Q
     ||||| |||||||| || ||||||||  |||| |  || ||||||||||||| ||  || ||||||||||| | ||| ||||| ||||||||||||||     
T  8639 tttcttgaaattttctctctgcagttccggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctggg 8738  T
Q  458 atacctgtaattggatcttgaacaaggcgcaatgttgccacaaaagtgaaaacattacttgcacgcaaaggaactttca 536  Q
    || | || |||||| |||||||  || ||||| |||||||||| ||||||||||||||||||| |||||||||||||||    
T  8739 atgcttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttca 8817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 139 - 546
Target Start/End: Complemental strand, 13113 - 12706
Alignment:
Q  139 ataaaaacttacatctccttttgtgttagaaatttctccaagaattgttgctaagagggttgattttcctgagccaacttcgccacaaatagccaccctt 238  Q
    |||||||||||||  ||| ||||| |||| || ||||||||||||||||||||| ||||||||||| || ||||||||||  || || ||||||||| ||    
T  13113 ataaaaacttacaattccctttgttttaggaacttctccaagaattgttgctaaaagggttgatttgccagagccaacttttccgcagatagccaccttt 13014  T
Q  239 tgtccatgtttaacgtccaaatttatgcttcttagtgttggctttattgcattaccttcccatgaaaagtcaaccgatttgataaagactgagcctttaa 338  Q
    || |||||| |||| || |||||||| || || | ||||||||||| |||||| |||||||||||||||||| | ||||| ||  | | ||||||||| |    
T  13013 tggccatgtctaacctcaaaatttatactcctcaatgttggctttaatgcattgccttcccatgaaaagtcagcggattttattgaaattgagcctttga 12914  T
Q  339 ggttatcatttaagcattggttcttaaaattttcactttgcagttcttgtgcttggagaaaattaacaatcctagcaaatgcaacttttgcttgaataat 438  Q
    ||| | ||   ||||| |  ||||| ||||||| |||   ||  ||  | || |  || |||  | |||| | ||||||||||||||| |||||||||||    
T  12913 ggtcaacacggaagcactcattcttcaaatttttactcaacaactccggggcattaaggaaaacagcaattcgagcaaatgcaactttagcttgaataat 12814  T
Q  439 caccgcaataacatctggaatacctgtaattggatcttgaacaaggcgcaatgttgccacaaaagtgaaaacattacttgcacgcaaaggaactttcaag 538  Q
    | | | ||||||||| ||||| | || |||||||||||||||||||  ||| ||||||||||| |||||||||||||||||| |||| ||||||| ||||    
T  12813 cgctgtaataacatccggaatgcttgaaattggatcttgaacaaggttcaaagttgccacaaatgtgaaaacattacttgcatgcaatggaacttccaag 12714  T
Q  539 aagtaaca 546  Q
    ||||||||    
T  12713 aagtaaca 12706  T

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Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 456 - 546
Target Start/End: Original strand, 38151443 - 38151533
Alignment:
Q  456 gaatacctgtaattggatcttgaacaaggcgcaatgttgccacaaaagtgaaaacattacttgcacgcaaaggaactttcaagaagtaaca 546  Q
    |||||| ||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  38151443 gaatacttgtaattggctcttgaacaaggcgcaaagttgcaacaaaagtgaaaacattacttgcatgcaaaggaacatccaagaagtaaca 38151533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 31291063 - 31291126
Alignment:
Q  172 ttctccaagaattgttgctaagagggttgattttcctgagccaacttcgccacaaatagccacc 235  Q
    ||||||||||||||||| ||| || ||||||||||||||||||||||| |||||||| ||||||    
T  31291063 ttctccaagaattgttgttaatagtgttgattttcctgagccaacttctccacaaatggccacc 31291126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 27957853 - 27957923
Alignment:
Q  158 tttgtgttagaaatttctccaagaattgttgctaagagggttgattttcctgagccaacttcgccacaaat 228  Q
    ||||| ||| ||| ||||||||||||||||||||| || ||| ||||||||||| ||||||| ||||||||    
T  27957853 tttgttttataaacttctccaagaattgttgctaatagcgttaattttcctgagacaacttctccacaaat 27957923  T

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Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 406 - 531
Target Start/End: Complemental strand, 44811895 - 44811770
Alignment:
Q  406 aatcctagcaaatgcaacttttgcttgaataatcaccgcaataacatctggaatacctgtaattggatcttgaacaaggcgcaatgttgccacaaaagtg 505  Q
    ||||| ||| || ||||||||||| ||||||| |||| ||||||| ||||| ||   | |||| ||||||||||||||||| || ||||| |||||||||    
T  44811895 aatccgagcgaacgcaacttttgcctgaataaccaccccaataacgtctgggatggatctaatcggatcttgaacaaggcgtaaagttgctacaaaagtg 44811796  T
Q  506 aaaacattacttgcacgcaaaggaac 531  Q
    ||||||||| ||||| ||||||||||    
T  44811795 aaaacattatttgcatgcaaaggaac 44811770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 160 - 264
Target Start/End: Complemental strand, 44812135 - 44812031
Alignment:
Q  160 tgtgttagaaatttctccaagaattgttgctaagagggttgattttcctgagccaacttcgccacaaatagccaccctttgtccatgtttaacgtccaaa 259  Q
    |||||||| || |||||||||||||| || |||||| | |||||| |||||||||||||| |||||||| || ||| ||||||||  |||||| ||||||    
T  44812135 tgtgttaggaacttctccaagaattgctgataagagagatgatttgcctgagccaacttctccacaaatcgcgaccttttgtccagatttaacttccaaa 44812036  T
Q  260 tttat 264  Q
    |||||    
T  44812035 tttat 44812031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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