View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_132 (Length: 210)
Name: NF7721_low_132
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_132 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 38808879 - 38809052
Alignment:
| Q |
10 |
atggacatcatacatttaaatggaacatcatacacactgctacactttcattttattatagttttttgtttgacttaatttatagatatgcatcttagga |
109 |
Q |
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| T |
38808879 |
atggacatcatacatttaaatggaacatcatacacattgctacactttcattttattatagttttttgtttgacttaatttataaatatgcatcttagga |
38808978 |
T |
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| Q |
110 |
gaatattccaattaacatcaatagaaaatattgcaaaatcaaaaaagccatcaaattctgtttcaatctaagaa |
183 |
Q |
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| T |
38808979 |
gaatattccaattaacatcaatagaaaatattgcaaaatcaaaaaagccatcaaattctgtttcaatctaagaa |
38809052 |
T |
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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 38821928 - 38821997
Alignment:
| Q |
95 |
atatgcatcttaggagaatattccaattaacatcaatagaaaatattgcaaaatcaaaaaagccatcaaa |
164 |
Q |
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| T |
38821928 |
atatgcatcttagaagaatattccaattgacatcaataacaaagattgcaaaatttaaaaagccaccaaa |
38821997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 35521775 - 35521721
Alignment:
| Q |
102 |
tcttaggagaatattccaattaacatcaatagaaaatattgcaaaatcaaaaaag |
156 |
Q |
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| T |
35521775 |
tctttggagaatattccaattgacattgatagcaaatatttcaaaatcaaaaaag |
35521721 |
T |
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