View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_133 (Length: 208)
Name: NF7721_low_133
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_133 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0011 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 270160 - 270354
Alignment:
| Q |
14 |
ttattctatcagtcttgtggtttttcaaccaagcataccgatggcgtccggtgagtcgatcggtaatggtcgagaaattaccggctgacgagaagttacc |
113 |
Q |
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| T |
270160 |
ttattctatcagtcttgtggtttttcaaccaagcataccgatggcggccggtgagtcgatcggtaatggtcgagaaattaccggctgacgagaagttacc |
270259 |
T |
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| Q |
114 |
gggactcgacatatttgtatgtacgattgatcctgaaaaagaaccaacggttgaagttatgaacactgttgtttctgctattgcaatggattacc |
208 |
Q |
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| T |
270260 |
gggactcgacatatttgtatgtacgattgatcctgaaaaagaaccaacggttgaagttatgaacactgttgtttctgctattgcaatggattacc |
270354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 17589219 - 17589022
Alignment:
| Q |
11 |
agattattctatcagtcttgtggtttttcaaccaagcataccgatggcgtccggtgagtcgatcggtaatggtcgagaaattaccggctgacgagaagtt |
110 |
Q |
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| T |
17589219 |
agattattctatcatttatgtgggttttcaaccaagcgttccgttggcggccggtgactcgttcagtgatgaccgagaaattaccggctgaagagaagtt |
17589120 |
T |
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| Q |
111 |
accgggactcgacatatttgtatgtacgattgatcctgaaaaagaaccaacggttgaagttatgaacactgttgtttctgctattgcaatggattacc |
208 |
Q |
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| T |
17589119 |
accgggactcgacatatttgtgtgtacgattgatcctgaaaaagaaccaacggtagaagttatgaacactgttgtttctgctattgctatggattacc |
17589022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 11766 - 11963
Alignment:
| Q |
11 |
agattattctatcagtcttgtggtttttcaaccaagcataccgatggcgtccggtgagtcgatcggtaatggtcgagaaattaccggctgacgagaagtt |
110 |
Q |
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| T |
11766 |
agattattctatcatttttgtggtttttcaaccaagcattccgttggaggctggtaaatcgttcagttatgaccgagaaattaccgcccgacgagaagtt |
11865 |
T |
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| Q |
111 |
accgggactcgacatatttgtatgtacgattgatcctgaaaaagaaccaacggttgaagttatgaacactgttgtttctgctattgcaatggattacc |
208 |
Q |
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| T |
11866 |
accgggactcgacatatttgtgtgtacgattgatcctgaaaaagaaccaacggttgatgttatgaacactgttatttctgctattgcaatggactacc |
11963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 29 - 208
Target Start/End: Complemental strand, 16386049 - 16385870
Alignment:
| Q |
29 |
tgtggtttttcaaccaagcataccgatggcgtccggtgagtcgatcggtaatggtcgagaaattaccggctgacgagaagttaccgggactcgacatatt |
128 |
Q |
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||||||||| | ||||||||| ||| ||||| ||| | | |||||| || ||| |||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
16386049 |
tgtggttttcccaccaagcattccgttggcggccgataactcgatcagttatgaccgagaatttaccggccgacgagaagttaccgggactcgacatatt |
16385950 |
T |
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| Q |
129 |
tgtatgtacgattgatcctgaaaaagaaccaacggttgaagttatgaacactgttgtttctgctattgcaatggattacc |
208 |
Q |
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| T |
16385949 |
tgtgtgtacaattgatcctgaaaaagaaccaactattgatgttatgaacactgttgtttctgctattgcaatggattacc |
16385870 |
T |
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