View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_17 (Length: 518)
Name: NF7721_low_17
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 20 - 489
Target Start/End: Complemental strand, 30055205 - 30054749
Alignment:
| Q |
20 |
agcatcttccaacccttagattaacttccaaacccttcaactccatccacactttcaccgaatcactctctcgaatcctgtctcttcgcgatgattccac |
119 |
Q |
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| T |
30055205 |
agcatcttccaacccttagattaacttccaaacccttcaactccatccacactttcaccgaatcactctctcgaatcctgtctcttcgcgatgattccac |
30055106 |
T |
|
| Q |
120 |
tccactccacactctcgagtttcttgacaaagaggtttccgtggaaccccgaatactgaatagtatcgtagaatacgctgtttcacatagtgtccaggta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || | | ||| |
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| T |
30055105 |
tccactccacactctcgagtttcttgacaaagaggttttcgtggaaccccgaatactgaatagtatcgtagaatacgctgt----caaattcacca---- |
30055014 |
T |
|
| Q |
220 |
ttacgaattccatcttgcttattttcatctcaaactttaacttctcttgacctttctattcacgttcgtattggagtatttaacaaagtatacttcccca |
319 |
Q |
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| T |
30055013 |
-----acttccatcttgcttattttcatctcaaactttaacttctcttgacctttctattcacgttcgtattgtagtatttaacaaagtatacttcccca |
30054919 |
T |
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| Q |
320 |
actctcttaatttgcctgctttaaccaccttggctgtaaggttcttccactttcgcgctggcgatgatggttgaatactttggtcattgaaagttttata |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30054918 |
actctcttaatttgcctgctttaaccaccttggctgtaaggttcttccactttcgcgctggcgatgatggttgaatactttggtcattgaaagttttaga |
30054819 |
T |
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| Q |
420 |
cttgtggaggatgcagaaactctttgtatatcaagtgacacacttgtcaatttgactatgtatggatatg |
489 |
Q |
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| T |
30054818 |
cttgtggaggatgtagaaactctttgtatatcaagtgacacacttgtcaatttgactatatatgggtatg |
30054749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 8400262 - 8400207
Alignment:
| Q |
227 |
ttccatcttgcttattttcatctcaaactttaacttctcttgacctttctattcac |
282 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
8400262 |
ttccatctttcttattttcatctcaaactttaacttctcttcacctttctcttcac |
8400207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 5368748 - 5368802
Alignment:
| Q |
227 |
ttccatcttgcttattttcatctcaaactttaacttctcttgacctttctattca |
281 |
Q |
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|||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
5368748 |
ttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattca |
5368802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 5374505 - 5374559
Alignment:
| Q |
227 |
ttccatcttgcttattttcatctcaaactttaacttctcttgacctttctattca |
281 |
Q |
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|||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
5374505 |
ttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattca |
5374559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 5367951 - 5367997
Alignment:
| Q |
236 |
gcttattttcatctcaaactttaacttctcttgacctttctattcac |
282 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
5367951 |
gcttattttcatctcaaaccttaacgtctcttgacctttctattcac |
5367997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 5362735 - 5362781
Alignment:
| Q |
236 |
gcttattttcatctcaaactttaacttctcttgacctttctattcac |
282 |
Q |
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||||||||||||||||||| ||||| |||||||||||||| |||||| |
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| T |
5362735 |
gcttattttcatctcaaaccttaacgtctcttgacctttccattcac |
5362781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 482
Target Start/End: Complemental strand, 45906437 - 45906383
Alignment:
| Q |
428 |
ggatgcagaaactctttgtatatcaagtgacacacttgtcaatttgactatgtat |
482 |
Q |
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||||||| |||| ||||| |||||||||| |||||||||||||| ||||||||| |
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| T |
45906437 |
ggatgcaaaaaccctttgcatatcaagtggaacacttgtcaatttaactatgtat |
45906383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 30597999 - 30597955
Alignment:
| Q |
230 |
catcttgcttattttcatctcaaactttaacttctcttgaccttt |
274 |
Q |
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|||||||||| ||||||| ||| |||||||| ||||||||||||| |
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| T |
30597999 |
catcttgctttttttcatgtcacactttaacctctcttgaccttt |
30597955 |
T |
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