View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_18 (Length: 517)
Name: NF7721_low_18
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Complemental strand, 49698922 - 49698446
Alignment:
| Q |
19 |
tagtttatacggtttcacgcagatataagaattatataacaaaaattaataac-aagcatacctgtagcgacggtcattgggggagatggttcttcgacg |
117 |
Q |
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| T |
49698922 |
tagtttatacggtttcacgcagatataagaattatataacaaaaattaataacgaagcatacctgtagcgacggtcattgggggagatggttcttcgacg |
49698823 |
T |
|
| Q |
118 |
gagtttggttcttttggctccgaaatcgcctagaggcggaagtggagctccgccggtgaggctgtacatgctgccatcatcgtgttccgggagaattcca |
217 |
Q |
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| T |
49698822 |
gagtttggttcttttggctccgaaatcgcctagaggcggaagtggagctccgccagtgaggctgtacatgctgccatcatcgtgttccgggagaattcca |
49698723 |
T |
|
| Q |
218 |
tctccattatgattttccatcatgttcatatttctctcatgatctaaggcatcatcatcgttgtggctttcatacatcatttttgcacaccgtagagatt |
317 |
Q |
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| T |
49698722 |
tctccattatgattttccatcatgttcatatttctctcatgatctaaggcatcatcatcgttgtggctttcatacatcatttttgcacaccgtagagatt |
49698623 |
T |
|
| Q |
318 |
agtaacaatgtttcaatgaaatttcttaatgtcacgattgtacgtctacggtttttatgaagctagctaactttgttcaatcattatatgattaatcacc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49698622 |
agtaacaatgtttcaatgaaatttcttaatgtcacgattgtacgtctacggtttttatgaagctagctaactttgttcaatcattatatgattaatcacc |
49698523 |
T |
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| Q |
418 |
atgcaacactagcttctttattaattctctggagatggaatttgtgtggtattgtatggtgttaattgcttcttctc |
494 |
Q |
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| T |
49698522 |
atgcaacaccagcttctttattaattctctggagatggaatttgtgtggtattgtatggtgttaattgcttcttctc |
49698446 |
T |
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