View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_21 (Length: 499)
Name: NF7721_low_21
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 41 - 482
Target Start/End: Original strand, 8153317 - 8153760
Alignment:
| Q |
41 |
ctttaatcctaactactttaaaaaattatacagtaaatatgatttaccttgatttgctcaaggtgtaatggtgactaaagtgagtcgaaagataatctca |
140 |
Q |
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| T |
8153317 |
ctttaatcctaactactttaaaaaattatacagtaaatatgatttaccttgatttgctcaaggtgtaatggtgactaaagtgagtcgaaagataatctca |
8153416 |
T |
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| Q |
141 |
aagtgaaactcccttgttttgcaagtaaagaaagaagaagataagaatgatgcagtaagcaattccctgagatttcagacaaccgagaaaaaggaggggc |
240 |
Q |
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| T |
8153417 |
aagtgaaactcccttgttttgcaagtaaagaaagaagaagataagaatgatgcagtaagcaattccctgagatttcagacaaccgagaaaaaggaggggc |
8153516 |
T |
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| Q |
241 |
ccacattcacatttttataagctattgcgtactcttccatttaatattaaaatcctaaacattcccaacacaaatccaataaatccacatctagatagag |
340 |
Q |
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| T |
8153517 |
ccacattcacatttttataagctattgcgtactctaccatttaatattaaaatcctaaacattcccaacacaaatccaataaatccacatctagatagag |
8153616 |
T |
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| Q |
341 |
tgtttttcttctctatttcaagttacttgttcc--nnnnnnnnngttcaatatcaatatatatgggtgtttgtgatgtagtagcgagtaatcttacaata |
438 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8153617 |
tgtttttcttctctatttcaagttacctgttcctttttttttttgttcaatatcaatatatatgggtgtttgtgatgtagtagcgagtaaccttacaata |
8153716 |
T |
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| Q |
439 |
atctatgtggcagttacatcatttgttaaggcttatgaagtttt |
482 |
Q |
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| T |
8153717 |
atctatgtggcagttacatcatttgttaaggcttatgaagtttt |
8153760 |
T |
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