View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7721_low_22 (Length: 495)

Name: NF7721_low_22
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7721_low_22
NF7721_low_22
[»] chr4 (13 HSPs)
chr4 (273-481)||(9603526-9603734)
chr4 (1-189)||(9603823-9604011)
chr4 (286-481)||(9582927-9583136)
chr4 (286-481)||(9588622-9588831)
chr4 (371-480)||(9594724-9594833)
chr4 (48-124)||(30441368-30441444)
chr4 (84-147)||(782390-782453)
chr4 (47-147)||(7257305-7257405)
chr4 (46-101)||(10156765-10156820)
chr4 (91-147)||(3664230-3664286)
chr4 (85-147)||(55301174-55301235)
chr4 (447-480)||(9573428-9573461)
chr4 (48-80)||(55052133-55052165)
[»] chr5 (11 HSPs)
chr5 (45-147)||(35323597-35323699)
chr5 (48-147)||(21039236-21039335)
chr5 (44-143)||(31859712-31859811)
chr5 (46-132)||(17223062-17223148)
chr5 (45-124)||(13271486-13271565)
chr5 (74-148)||(18401235-18401310)
chr5 (47-145)||(14872588-14872686)
chr5 (71-124)||(8217125-8217178)
chr5 (91-132)||(28503275-28503315)
chr5 (48-80)||(4064241-4064273)
chr5 (81-145)||(38290772-38290836)
[»] chr8 (9 HSPs)
chr8 (71-143)||(44173167-44173239)
chr8 (70-147)||(9045697-9045774)
chr8 (45-147)||(27157688-27157790)
chr8 (45-135)||(39039698-39039788)
chr8 (71-124)||(39555878-39555931)
chr8 (53-132)||(37507539-37507617)
chr8 (77-132)||(40899651-40899706)
chr8 (84-132)||(7632687-7632735)
chr8 (71-147)||(7685450-7685525)
[»] chr6 (12 HSPs)
chr6 (47-189)||(7591053-7591196)
chr6 (65-147)||(989501-989583)
chr6 (48-147)||(6978498-6978598)
chr6 (62-146)||(33450815-33450900)
chr6 (51-134)||(20207190-20207273)
chr6 (51-134)||(22101213-22101296)
chr6 (45-147)||(30522093-30522195)
chr6 (74-131)||(13214195-13214252)
chr6 (45-132)||(29389192-29389278)
chr6 (44-135)||(32826710-32826801)
chr6 (53-109)||(9540583-9540639)
chr6 (84-132)||(33148312-33148360)
[»] chr7 (6 HSPs)
chr7 (47-145)||(40256804-40256902)
chr7 (46-135)||(44453593-44453682)
chr7 (45-147)||(2391578-2391680)
chr7 (46-132)||(22713451-22713536)
chr7 (58-124)||(31459414-31459480)
chr7 (71-132)||(3255158-3255219)
[»] chr3 (9 HSPs)
chr3 (45-134)||(7925337-7925426)
chr3 (53-147)||(25123224-25123318)
chr3 (47-144)||(33513396-33513492)
chr3 (47-147)||(36692887-36692987)
chr3 (47-135)||(23771674-23771764)
chr3 (49-115)||(26665523-26665589)
chr3 (92-147)||(36679272-36679327)
chr3 (73-147)||(32808564-32808638)
chr3 (79-147)||(14338928-14338994)
[»] chr1 (6 HSPs)
chr1 (47-135)||(7439097-7439185)
chr1 (53-135)||(31577996-31578077)
chr1 (45-147)||(31767924-31768027)
chr1 (44-132)||(38091249-38091337)
chr1 (62-139)||(32556519-32556596)
chr1 (45-132)||(51906955-51907044)
[»] chr2 (8 HSPs)
chr2 (46-145)||(37267707-37267806)
chr2 (47-147)||(5867900-5867999)
chr2 (50-146)||(24166791-24166887)
chr2 (61-147)||(10696366-10696452)
chr2 (82-146)||(45203216-45203280)
chr2 (81-132)||(13378426-13378477)
chr2 (47-132)||(43050109-43050193)
chr2 (53-101)||(25314700-25314748)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 273 - 481
Target Start/End: Complemental strand, 9603734 - 9603526
Alignment:
Q  273 cagaagggtttgaagggcccctttctcaatatataaaagatgttagggtttctccattcatccacaaactcgctcaaaaattgtttagggtttctactaa 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9603734 cagaagggtttgaagggcccctttctcaatatataaaagatgttagggtttctccattcatccacaaactcgctcaaaagttgtttagggtttctactaa 9603635  T
Q  373 tcactttgcgctttcaagatctcattgcattccgatttgcaacctgcaatggagtcggtggctgtaaagaatgaaaaggttagcaccacctatatacctg 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  9603634 tcactttgcgctttcaagatctcattgcattccgatttgcaacctgcaatggagtcggtggctgtaaagaacgaaaagggtagcaccacctatatacctg 9603535  T
Q  473 atgatattg 481  Q
    |||||||||    
T  9603534 atgatattg 9603526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 9604011 - 9603823
Alignment:
Q  1 tataagattttgtactctttcattgatagtcatccatgaaattagccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9604011 tataagattttgtactctttcattgatagtcatccatgaaattagccattatttttcccaccctatgaccttctcgcgcgtcctattcaaattctaaaat 9603912  T
Q  101 ctggaatatttcaacgtatttttggaggttttatgaggtttttatgctaaaatctgaactacatagacgcttgagaaactaataggatg 189  Q
    ||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| ||||||||    
T  9603911 ctgaaatattttaacgtatttttggaggttttatggggtttttattctaaaatccgaactacatagacgcttgagaaactcataggatg 9603823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 286 - 481
Target Start/End: Complemental strand, 9583136 - 9582927
Alignment:
Q  286 agggcccctttctcaatatataaaagat-gttagggtttctccattcatccacaaactcgctcaaaaattgtttagggtttctact-------------a 371  Q
    ||||| ||||||||||||||||||| |  | ||||||||||  ||||||||||| |||||||| ||| ||||||||||||||| ||             |    
T  9583136 agggctcctttctcaatatataaaaaagcgctagggtttctatattcatccacagactcgctccaaatttgtttagggtttctgctttctagtaatccca 9583037  T
Q  372 atcactttgcgctttcaagatctcattgcattccgatttgcaacctgcaatggagtcggtggctg-taaagaatgaaaaggttagcaccacctatatacc 470  Q
    ||||||||| ||||||| ||||||| |||||||| ||||||||||  | |||||||| || |||| |||| || |||| ||| |||||||||||||||||    
T  9583036 atcactttgtgctttcaggatctcactgcattccaatttgcaaccgccgatggagtcagtcgctgctaaaaaaagaaa-ggtgagcaccacctatatacc 9582938  T
Q  471 tgatgatattg 481  Q
    |||||| ||||    
T  9582937 tgatgaaattg 9582927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 286 - 481
Target Start/End: Complemental strand, 9588831 - 9588622
Alignment:
Q  286 agggcccctttctcaatatataaaagat-gttagggtttctccattcatccacaaactcgctcaaaaattgtttagggtttctact-------------a 371  Q
    ||||| ||||||||||||||||||| |  | ||||||||||  ||||||||||| |||||||| ||| ||||||||||||||| ||             |    
T  9588831 agggctcctttctcaatatataaaaaagcgctagggtttctatattcatccacagactcgctccaaatttgtttagggtttctgctttctagtaatccca 9588732  T
Q  372 atcactttgcgctttcaagatctcattgcattccgatttgcaacctgcaatggagtcggtggctg-taaagaatgaaaaggttagcaccacctatatacc 470  Q
    ||||||||| ||||||| ||||||| |||||||| ||||||||||  | |||||||| || |||| |||| || |||| ||| |||||||||||||||||    
T  9588731 atcactttgtgctttcaggatctcactgcattccaatttgcaaccgccgatggagtcagtcgctgctaaaaaaagaaa-ggtgagcaccacctatatacc 9588633  T
Q  471 tgatgatattg 481  Q
    |||||| ||||    
T  9588632 tgatgaaattg 9588622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 480
Target Start/End: Complemental strand, 9594833 - 9594724
Alignment:
Q  371 aatcactttgcgctttcaagatctcattgcattccgatttgcaacctgcaatggagtcggtggctgtaaagaatgaaaaggttagcaccacctatatacc 470  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||    |||||||| ||||| | ||| ||   |||||| ||||||||||||||| |    
T  9594833 aatcactttgcgctttcaatatctcattgcattccaatttacaaccgctcatggagtcagtggccgcaaaaaagagaaaggtgagcaccacctatatagc 9594734  T
Q  471 tgatgatatt 480  Q
    ||||||||||    
T  9594733 tgatgatatt 9594724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 30441368 - 30441444
Alignment:
Q  48 attatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttg 124  Q
    |||| |||||||||||||||| ||||||| ||  |||||| ||||||||||||| | || |||||||||||||||||    
T  30441368 attacttttcccaccctatgagcttctcgtgcaccctatttagattctaaaatccgaaacatttcaacgtatttttg 30441444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 782453 - 782390
Alignment:
Q  84 tattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 147  Q
    ||||| |||||||||||| | ||||||||||| | ||||||||| |||||||||||||||||||    
T  782453 tattcggattctaaaatccgaaatatttcaacttttttttggagattttatgaggtttttatgc 782390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 7257405 - 7257305
Alignment:
Q  47 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatg 146  Q
    ||||| |||| |||||||||||  |||||||  | |||||||  |||||||||||    |||||||||| | |||||||||||||||||||| |||||||    
T  7257405 cattactttttccaccctatgaggttctcgcatgccctattcgtattctaaaatccaagatatttcaacatgtttttggaggttttatgaggattttatg 7257306  T
Q  147 c 147  Q
    |    
T  7257305 c 7257305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 10156765 - 10156820
Alignment:
Q  46 ccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatc 101  Q
    |||||||||||||||  |||||| ||||||||||  ||||||||||||||||||||    
T  10156765 ccattatttttcccattctatgagcttctcgcgcaccctattcagattctaaaatc 10156820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 3664230 - 3664286
Alignment:
Q  91 attctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 147  Q
    ||||||||||| | ||||||| ||||| |||||| |||||||||||| |||||||||    
T  3664230 attctaaaatccgaaatattttaacgtgtttttgtaggttttatgagatttttatgc 3664286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 55301235 - 55301174
Alignment:
Q  85 attcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 147  Q
    |||||||||||||||||   ||||||||||||| ||||| ||| ||||||||| |||||||||    
T  55301235 attcagattctaaaatcca-aatatttcaacgtgtttttagagattttatgagatttttatgc 55301174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 480
Target Start/End: Original strand, 9573428 - 9573461
Alignment:
Q  447 aaaggttagcaccacctatatacctgatgatatt 480  Q
    |||||| |||||||||||||||||||||||||||    
T  9573428 aaaggtgagcaccacctatatacctgatgatatt 9573461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 55052133 - 55052165
Alignment:
Q  48 attatttttcccaccctatgaccttctcgcgcg 80  Q
    |||||||||||||||||||||||||||| ||||    
T  55052133 attatttttcccaccctatgaccttctcccgcg 55052165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 35323597 - 35323699
Alignment:
Q  45 gccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggttttta 144  Q
    ||||||| |||||||||| |||||  |||||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||||   ||||||||    
T  35323597 gccattacttttcccaccttatgagattctcgtgcgtcctattcagattctaaaatccgaaatatttcaacgtatttttgaaggttttacagggttttta 35323696  T
Q  145 tgc 147  Q
    |||    
T  35323697 tgc 35323699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 21039236 - 21039335
Alignment:
Q  48 attatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 147  Q
    ||||||||||||||||||  |  |||||| |||||||||||||||| ||||||| | ||||||||   || | |||||||||||| ||||||||||||||    
T  21039236 attatttttcccaccctacaagtttctcgtgcgtcctattcagattttaaaatccgaaatatttctttgtgtgtttggaggttttttgaggtttttatgc 21039335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 31859712 - 31859811
Alignment:
Q  44 agccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggttttt 143  Q
    |||||||| |||| ||| | ||||| ||||||| ||| ||||||| || ||||||||| | |||||| |||| ||||||||||| ||||||| |||||||    
T  31859712 agccattacttttgccatcttatgagcttctcgtgcgccctattcggactctaaaatccgaaatattccaacttatttttggagattttatggggttttt 31859811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 17223062 - 17223148
Alignment:
Q  46 ccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 132  Q
    |||||| ||||||||||  ||||  ||||| |||| | |||| ||||||||||||||| ||||||||||||| |||||| |||||||    
T  17223062 ccattacttttcccacctgatgagtttctcacgcgccttatttagattctaaaatctgaaatatttcaacgtgtttttgcaggtttt 17223148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 13271565 - 13271486
Alignment:
Q  45 gccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttg 124  Q
    ||||||| |||| ||||| ||| |  |||||||||||||||||   ||||||||||||| ||||||||||||| ||||||    
T  13271565 gccattactttttccaccatattagtttctcgcgcgtcctatttgaattctaaaatctgaaatatttcaacgtgtttttg 13271486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 18401235 - 18401310
Alignment:
Q  74 tcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggt-tttatgaggtttttatgct 148  Q
    ||||| || ||||||||||| || |||||| ||| ||||||||| ||||||||||| | |||||||| ||||||||    
T  18401235 tcgcgtgttctattcagattatagaatctgaaatgtttcaacgtgtttttggaggtctgtatgaggtgtttatgct 18401310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 145
Target Start/End: Original strand, 14872588 - 14872686
Alignment:
Q  47 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttat 145  Q
    ||||| |||||||||||||| |  |||||| |||  || || | |||||||||||   ||||||||||||| ||||| ||||||||||  |||||||||    
T  14872588 cattacttttcccaccctattaggttctcgtgcgctctgtttaaattctaaaatccaaaatatttcaacgtgtttttagaggttttatagggtttttat 14872686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 8217125 - 8217178
Alignment:
Q  71 ttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttg 124  Q
    |||||||||| |||||||| ||||||||||||| ||| ||| ||||| ||||||    
T  8217125 ttctcgcgcgccctattcaaattctaaaatctgaaatgttttaacgtgtttttg 8217178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 28503315 - 28503275
Alignment:
Q  91 attctaaaatctggaatatttcaacgtatttttggaggtttt 132  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  28503315 attctaaaatctgaaatatttcaacgta-ttttggaggtttt 28503275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 4064241 - 4064273
Alignment:
Q  48 attatttttcccaccctatgaccttctcgcgcg 80  Q
    |||||||||||||||||||||||||||| ||||    
T  4064241 attatttttcccaccctatgaccttctcccgcg 4064273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 38290772 - 38290836
Alignment:
Q  81 tcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttat 145  Q
    ||||| || |||||||||||  | || |||||||| | ||||||||||||||||| |||||||||    
T  38290772 tcctactcggattctaaaattagaaagatttcaacatgtttttggaggttttatggggtttttat 38290836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 44173167 - 44173239
Alignment:
Q  71 ttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggttttt 143  Q
    |||||||||| |||||||||||||||||||| | ||||||||||||||||||||||| |||||||| ||||||    
T  44173167 ttctcgcgcgccctattcagattctaaaatcagaaatatttcaacgtatttttggagattttatgaagttttt 44173239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 9045774 - 9045697
Alignment:
Q  70 cttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 147  Q
    ||||| || |||||||||||||||  |||||||| ||||||||||||| |||||||||||||||||  ||||||||||    
T  9045774 cttcttgcacgtcctattcagatttaaaaatctgaaatatttcaacgtgtttttggaggttttatggagtttttatgc 9045697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 27157790 - 27157688
Alignment:
Q  45 gccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggttttta 144  Q
    ||||||| |||| |||||||||||  |||||| |||| |||||| |||||||||||| | | |||||||||||  |||||||| ||||||| ||| ||||    
T  27157790 gccattactttttccaccctatgagtttctcgtgcgtgctattcggattctaaaatccgaattatttcaacgtggttttggagattttatggggtattta 27157691  T
Q  145 tgc 147  Q
    |||    
T  27157690 tgc 27157688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 39039698 - 39039788
Alignment:
Q  45 gccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatg 135  Q
    ||||||||||||  || ||||| | ||||| |||||||||||| ||||||||||||| | || |||||||||| ||||| || ||||||||    
T  39039698 gccattatttttttcatcctataagcttcttgcgcgtcctatttagattctaaaatccgaaacatttcaacgtgtttttagaagttttatg 39039788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 39555878 - 39555931
Alignment:
Q  71 ttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttg 124  Q
    |||||||||||||| |||||||| ||||||||| ||| ||||||||| ||||||    
T  39555878 ttctcgcgcgtcctgttcagattttaaaatctgaaatgtttcaacgtgtttttg 39555931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 37507539 - 37507617
Alignment:
Q  53 ttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 132  Q
    ||||||||||||||||  |||| ||||| |||||||  ||||||||||| | ||| |||||||||  |||||||||||||    
T  37507539 ttttcccaccctatgagtttcttgcgcgccctattcgaattctaaaatccgaaatgtttcaacgt-gttttggaggtttt 37507617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 40899651 - 40899706
Alignment:
Q  77 cgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 132  Q
    |||| |||||||||||| ||||||||| ||||||| ||||| |||||| |||||||    
T  40899651 cgcgccctattcagattttaaaatctgaaatattttaacgtgtttttgaaggtttt 40899706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 7632687 - 7632735
Alignment:
Q  84 tattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 132  Q
    |||||| ||| |||||| || |||||||||||||||||||| |||||||    
T  7632687 tattcaaattttaaaatttgaaatatttcaacgtatttttgaaggtttt 7632735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 7685450 - 7685525
Alignment:
Q  71 ttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 147  Q
    ||||||| | ||||||| | ||| ||||||||| |||||||||||||| ||||| | ||||||||  ||||||||||    
T  7685450 ttctcgcacatcctatttaaattttaaaatctgaaatatttcaacgta-ttttgaaagttttatggagtttttatgc 7685525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 189
Target Start/End: Original strand, 7591053 - 7591196
Alignment:
Q  47 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatg 146  Q
    ||||| |||||||| |||||||  ||| ||||||||||||| ||||||||||||| | ||||||||||||| ||||| |||||||||||  |||   ||     
T  7591053 cattacttttcccatcctatgaatttcccgcgcgtcctattaagattctaaaatccgaaatatttcaacgtgttttttgaggttttatgcagttcggatt 7591152  T
Q  147 ctaaaatctgaactacata-gacgcttgagaaactaataggatg 189  Q
    ||||||||  |||| |||| |||||||||||| || ||||||||    
T  7591153 ctaaaatccaaactgcataggacgcttgagaagctcataggatg 7591196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 989501 - 989583
Alignment:
Q  65 atgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 147  Q
    |||| |||||||| || |||||||||| ||||||||||| ||||||||||||| ||||||||| ||||||| || ||||||||    
T  989501 atgagcttctcgcacgccctattcagaatctaaaatctgaaatatttcaacgtgtttttggagattttatgggggttttatgc 989583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 147
Target Start/End: Complemental strand, 6978598 - 6978498
Alignment:
Q  48 attatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgt-atttttggaggttttatgaggtttttatg 146  Q
    |||| |||| ||| |||||||  |||||| ||||||||||  |||||||||||||  ||||||||||||| ||||||||||||||||||  |||||||||    
T  6978598 attactttttccatcctatgagtttctcgtgcgtcctatttggattctaaaatctaaaatatttcaacgtaatttttggaggttttatggagtttttatg 6978499  T
Q  147 c 147  Q
    |    
T  6978498 c 6978498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 33450815 - 33450900
Alignment:
Q  62 cctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggagg-ttttatgaggtttttatg 146  Q
    ||||||| ||||| ||||||||||||| |||||||||||  | ||||||||||||| |||||||||| ||||| ||||| ||||||    
T  33450815 cctatgagcttcttgcgcgtcctattcggattctaaaattcgaaatatttcaacgtgtttttggaggcttttaggaggtgtttatg 33450900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 20207273 - 20207190
Alignment:
Q  51 atttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttat 134  Q
    ||||||| ||| ||||||   ||||||  |||||||||||||||||||||||| ||||||||||||| |||||| || ||||||    
T  20207273 atttttctcactctatgaatatctcgcatgtcctattcagattctaaaatctgaaatatttcaacgtgtttttgaagtttttat 20207190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 22101296 - 22101213
Alignment:
Q  51 atttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttat 134  Q
    ||||||| ||| ||||||   ||||||  |||||||||||||||||||||||| ||||||||||||| |||||| || ||||||    
T  22101296 atttttctcactctatgaatatctcgcatgtcctattcagattctaaaatctgaaatatttcaacgtgtttttgaagtttttat 22101213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 30522195 - 30522093
Alignment:
Q  45 gccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggttttta 144  Q
    ||||||| |||||||||| |||||  |||| | | | ||||||| ||||| |||||| | ||| |||  |||| ||||||||||||||||||||||||||    
T  30522195 gccattacttttcccaccttatgaggttcttgtgtgccctattcggattccaaaatccgaaatgtttttacgtgtttttggaggttttatgaggttttta 30522096  T
Q  145 tgc 147  Q
    |||    
T  30522095 tgc 30522093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 13214252 - 13214195
Alignment:
Q  74 tcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttt 131  Q
    |||||| ||||||||||||| ||||||| | ||||||||||||| ||||| |||||||    
T  13214252 tcgcgcatcctattcagattttaaaatccgaaatatttcaacgtgtttttagaggttt 13214195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 29389278 - 29389192
Alignment:
Q  45 gccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 132  Q
    ||||||| |||| ||||||||| |  ||||||| || |||||||||||| ||||||| | ||| ||||||||| |||||| |||||||    
T  29389278 gccattactttttccaccctataat-ttctcgcacgccctattcagattttaaaatccgaaatgtttcaacgtgtttttgaaggtttt 29389192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 32826801 - 32826710
Alignment:
Q  44 agccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatg 135  Q
    |||||||| |||| |||  ||||||  ||||||||||| |||||   |||||||||| |  ||||||||||||  |||||||||||||||||    
T  32826801 agccattactttttccattctatgagtttctcgcgcgttctatttgaattctaaaattttaaatatttcaacgagtttttggaggttttatg 32826710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 9540639 - 9540583
Alignment:
Q  53 ttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatat 109  Q
    ||||| || |||||||  ||||| |||| |||||||||||||||||||||| |||||    
T  9540639 ttttctcatcctatgagtttctcacgcgccctattcagattctaaaatctgaaatat 9540583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 33148360 - 33148312
Alignment:
Q  84 tattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 132  Q
    ||||| ||||||||||  || ||||||||||||| ||||||||||||||    
T  33148360 tattcggattctaaaaattgaaatatttcaacgtgtttttggaggtttt 33148312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 47 - 145
Target Start/End: Original strand, 40256804 - 40256902
Alignment:
Q  47 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttat 145  Q
    ||||||||||| ||||||||||  || ||||||| | ||||| |||| ||||||||| |||||| |||||| ||||||||||||||||| |||||||||    
T  40256804 cattatttttctcaccctatgagtttttcgcgcgccttattcggattttaaaatctgaaatattgcaacgtgtttttggaggttttatgtggtttttat 40256902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 44453593 - 44453682
Alignment:
Q  46 ccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatg 135  Q
    |||||| ||||  |||||||| |  ||||||  |||||||||| |||||||||||  | ||||||||||||| |||||||| ||||||||    
T  44453593 ccattacttttttcaccctataagtttctcgtacgtcctattcggattctaaaattcgaaatatttcaacgtgtttttggaagttttatg 44453682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 2391578 - 2391680
Alignment:
Q  45 gccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggttttta 144  Q
    ||||||| ||||  || |||||||  ||||||||||  |||||  |||||||||||| | ||||||||||| |||||||  |||| || || ||||||||    
T  2391578 gccattacttttttcatcctatgagtttctcgcgcgcactatttggattctaaaatccgaaatatttcaacatattttttaaggtcttgtggggttttta 2391677  T
Q  145 tgc 147  Q
    |||    
T  2391678 tgc 2391680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 22713536 - 22713451
Alignment:
Q  46 ccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 132  Q
    |||||| |||| ||||| |||||  |||||| ||| ||||||   ||| ||||||||| ||||||||||||| ||||||||||||||    
T  22713536 ccattactttttccaccttatgagtttctcgtgcg-cctatttgaattttaaaatctgaaatatttcaacgtgtttttggaggtttt 22713451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 31459414 - 31459480
Alignment:
Q  58 ccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttg 124  Q
    ||||||||| |  |||||| | |||||||||| ||| ||||||| | ||||||||||||||||||||    
T  31459414 ccaccctataagtttctcgtgtgtcctattcaaattttaaaatccgaaatatttcaacgtatttttg 31459480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 3255219 - 3255158
Alignment:
Q  71 ttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 132  Q
    ||||||||||  |||||| |||||||||||||  ||||||||||  |||||||| |||||||    
T  3255219 ttctcgcgcgctctattcggattctaaaatctaaaatatttcaatatatttttgaaggtttt 3255158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 7925337 - 7925426
Alignment:
Q  45 gccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttat 134  Q
    ||||||| |||| |||||||||||  ||||| || |||||||| ||||||||||||||| |||||||||||||||||||  |||||||||    
T  7925337 gccattactttttccaccctatgaatttctcacgtgtcctatttagattctaaaatctgaaatatttcaacgtattttttaaggttttat 7925426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 25123224 - 25123318
Alignment:
Q  53 ttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 147  Q
    |||| ||||| |||||  || ||||||| ||||||||||||||||||||   ||||||| ||||  ||||||||||||||||  |||||||||||    
T  25123224 tttttccaccatatgagtttttcgcgcgccctattcagattctaaaatccaaaatattttaacgcgtttttggaggttttatagggtttttatgc 25123318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 33513492 - 33513396
Alignment:
Q  47 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggttttta 144  Q
    |||||||||| |||||||||||  |||| | ||  ||||||| ||||||||||||   ||||||||||||| |||| |||||||||||| ||||||||    
T  33513492 cattattttttccaccctatgagtttcttgtgcaccctattcggattctaaaatcctaaatatttcaacgtgttttcggaggttttatg-ggttttta 33513396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 36692987 - 36692887
Alignment:
Q  47 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatg 146  Q
    ||||| ||||| || | ||||| |||||||||||  |||||    |||||||||||| |||||||||| ||||||||| || ||||| ||||||||||||    
T  36692987 cattacttttctcatcatatgagcttctcgcgcgctctatttgagttctaaaatctgaaatatttcaatgtatttttgaagtttttacgaggtttttatg 36692888  T
Q  147 c 147  Q
    |    
T  36692887 c 36692887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 23771674 - 23771764
Alignment:
Q  47 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaac--gtatttttggaggttttatg 135  Q
    ||||| ||||| |||||||||| ||| |||||||  |||||  |||||||||||||  |||||||||||  || |||||||||||||||||    
T  23771674 cattacttttcgcaccctatgagcttatcgcgcgctctatttggattctaaaatcttaaatatttcaacatgtttttttggaggttttatg 23771764  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 26665589 - 26665523
Alignment:
Q  49 ttatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaac 115  Q
    |||||||||||| |||||||  |||||||||||||||||  |||| ||||||| | |||||||||||    
T  26665589 ttatttttcccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaac 26665523  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 36679327 - 36679272
Alignment:
Q  92 ttctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 147  Q
    |||||||||||| |||||||||| || |||||| || ||||| |||||||||||||    
T  36679327 ttctaaaatctgaaatatttcaatgtttttttgaagtttttacgaggtttttatgc 36679272  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 32808564 - 32808638
Alignment:
Q  73 ctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 147  Q
    ||||||||| |||||| |||| |||||||   ||| ||| ||  ||||||||||||||||||||| |||||||||    
T  32808564 ctcgcgcgttctattcggattttaaaatccaaaattttttaatttatttttggaggttttatgagatttttatgc 32808638  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 14338928 - 14338994
Alignment:
Q  79 cgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 147  Q
    ||||||||||||||||| |||||   ||||||||||||| ||||  |||||||||| |||| |||||||    
T  14338928 cgtcctattcagattcttaaatccaaaatatttcaacgtgtttt--gaggttttataaggtatttatgc 14338994  T

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Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 7439185 - 7439097
Alignment:
Q  47 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatg 135  Q
    ||||| ||||| || |||||||  ||||||||||||||||||| ||||||||||||  ||||||||||||| |||||| ||||||||||    
T  7439185 cattacttttctcatcctatgagattctcgcgcgtcctattcaaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatg 7439097  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 31578077 - 31577996
Alignment:
Q  53 ttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatg 135  Q
    |||||||||| ||||| ||||||||||| ||||||  |||||||||||| | ||||||||||||| |||||||||||||||||    
T  31578077 ttttcccacc-tatgagcttctcgcgcgccctatttggattctaaaatccgaaatatttcaacgtgtttttggaggttttatg 31577996  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 31768027 - 31767924
Alignment:
Q  45 gccattatttttcccaccc-tatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggttttt 143  Q
    ||||||| ||||||||||| ||||  |||||| |||| ||||||  |||| ||||||| | ||||||||||||| |||||| | ||||||||||||||||    
T  31768027 gccattacttttcccacccctatgcgcttctcacgcgccctatttggattttaaaatccgaaatatttcaacgtgtttttgaaagttttatgaggttttt 31767928  T
Q  144 atgc 147  Q
    ||||    
T  31767927 atgc 31767924  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 38091337 - 38091249
Alignment:
Q  44 agccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 132  Q
    |||||||| ||||| || ||| |||| ||||||||||||||||||||||||||||||  | ||||||||| ||| || ||| |||||||    
T  38091337 agccattacttttcacatcctgtgacgttctcgcgcgtcctattcagattctaaaattcgaaatatttcaccgtgttattgaaggtttt 38091249  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 32556596 - 32556519
Alignment:
Q  62 cctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt-atgaggt 139  Q
    |||||||  ||||||| |||||||||| |||| ||||||||| ||||||  |||||||||| ||||||||| |||||||    
T  32556596 cctatgagtttctcgcacgtcctattcggattttaaaatctgaaatattgtaacgtatttt-ggaggtttttatgaggt 32556519  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 51907044 - 51906955
Alignment:
Q  45 gccattatttttcccaccctatgaccttctc-gcgcgtcctattcagattctaaaatctggaatatttcaacgt-atttttggaggtttt 132  Q
    ||||||| ||||||||||| |||| |||||| || || ||| || ||||||||||||| | ||||||||||| |  ||||||||||||||    
T  51907044 gccattacttttcccacccgatgagcttctcagcacgccctgtttagattctaaaatccgaaatatttcaacatgttttttggaggtttt 51906955  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 37267707 - 37267806
Alignment:
Q  46 ccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttat 145  Q
    |||||| |||| ||||| ||||| ||||||| | | ||||||  |||||||||||| | ||||||| ||||| |||| |||||||||||||| |||||||    
T  37267707 ccattactttttccaccttatgagcttctcgtgtgccctatttggattctaaaatccgaaatattttaacgtgttttgggaggttttatgagatttttat 37267806  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 5867900 - 5867999
Alignment:
Q  47 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatg 146  Q
    ||||| |||| || |||||| | ||||||||| |  |||||| |||| ||||||||| ||||||||||||| ||||||||| ||||||| || |||||||    
T  5867900 cattactttttccgccctataagcttctcgcgtgctctattc-gattttaaaatctgaaatatttcaacgtgtttttggagattttatgtgggttttatg 5867998  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 24166791 - 24166887
Alignment:
Q  50 tatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatg 146  Q
    ||||||| |||||||||||  ||||| |||| ||||||| |||||| ||||  | ||||||||||| | ||||| |||||||||||  |||||||||    
T  24166791 tattttttccaccctatgagtttctcacgcgccctattcggattcttaaattcgaaatatttcaacatgtttttagaggttttatggagtttttatg 24166887  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 147
Target Start/End: Complemental strand, 10696452 - 10696366
Alignment:
Q  61 ccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 147  Q
    ||||||||  |||||||||   ||||||  |||||||||||   |||||||||||||||||||| |||||||| | |||||||||||    
T  10696452 ccctatgaagttctcgcgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgc 10696366  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 45203216 - 45203280
Alignment:
Q  82 cctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatg 146  Q
    ||||||| |||||||||||| | |||||||||| || ||||| ||||||||||| | ||||||||    
T  45203216 cctattcggattctaaaatccgaaatatttcaatgtgtttttcgaggttttatgggatttttatg 45203280  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 13378477 - 13378426
Alignment:
Q  81 tcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 132  Q
    |||||||| |||| ||||||||| |||||||||| || ||||||||||||||    
T  13378477 tcctattcggattataaaatctgaaatatttcaatgtgtttttggaggtttt 13378426  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 43050109 - 43050193
Alignment:
Q  47 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 132  Q
    ||||| ||||||||||||||||  |||| || || | ||||| |||| ||||||||| ||| |||||||||  |||||||||||||    
T  43050109 cattacttttcccaccctatgagtttcttgcacgccttattcggattttaaaatctgaaatgtttcaacgt-gttttggaggtttt 43050193  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 25314700 - 25314748
Alignment:
Q  53 ttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatc 101  Q
    ||||||||||||||||  ||||||| || ||||||| ||||||||||||    
T  25314700 ttttcccaccctatgagtttctcgcacgccctattcggattctaaaatc 25314748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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