View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7721_low_26 (Length: 488)

Name: NF7721_low_26
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7721_low_26
NF7721_low_26
[»] chr5 (2 HSPs)
chr5 (1-466)||(39184653-39185120)
chr5 (15-226)||(8730292-8730501)
[»] chr1 (4 HSPs)
chr1 (22-237)||(42373538-42373752)
chr1 (13-369)||(17032737-17033101)
chr1 (15-241)||(19597952-19598180)
chr1 (171-239)||(41919898-41919966)
[»] chr2 (4 HSPs)
chr2 (15-226)||(25505406-25505615)
chr2 (15-231)||(22885907-22886124)
chr2 (120-246)||(31902910-31903036)
chr2 (120-275)||(39339357-39339512)
[»] chr4 (4 HSPs)
chr4 (128-245)||(16501182-16501300)
chr4 (29-231)||(46699364-46699566)
chr4 (171-239)||(30963879-30963947)
chr4 (59-114)||(12295557-12295612)
[»] chr7 (6 HSPs)
chr7 (79-239)||(37792747-37792908)
chr7 (177-239)||(38484991-38485053)
chr7 (120-275)||(47326396-47326551)
chr7 (177-246)||(3420242-3420311)
chr7 (128-231)||(12480298-12480402)
chr7 (171-239)||(38305676-38305744)
[»] chr3 (4 HSPs)
chr3 (16-203)||(25595029-25595217)
chr3 (66-231)||(5555991-5556158)
chr3 (120-241)||(17501759-17501880)
chr3 (130-228)||(1653452-1653550)
[»] chr8 (4 HSPs)
chr8 (92-244)||(9519052-9519205)
chr8 (177-239)||(34866640-34866702)
chr8 (152-231)||(10551752-10551832)
chr8 (171-239)||(34389590-34389658)
[»] chr6 (1 HSPs)
chr6 (128-239)||(12793553-12793664)


Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 39184653 - 39185120
Alignment:
Q  1 accaccaacaccaacaagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccaca 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39184653 accaccaacaccaacaagacaacaaagttgaaagacttcaaggaaagcggccacaacgccatagcattccgaagaagcagccacgaagaatatacccaca 39184752  T
Q  101 agccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaa 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39184753 agccaacgatagagccaaaactacgccgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatatataggaagacgaaacacaactacaaa 39184852  T
Q  201 acatgggcaacgacgccagtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgtatgtcgccggagtaaacaa 300  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39184853 acataggcaacgacgccagtttgaagcagaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacatatgtcgccggagtaaacaa 39184952  T
Q  301 ccaaccccattaacctgcggaactgacccaatcgaagccgatctcagcaacaaaatcaccaaaaccagtaccaaacctgaaagcatgtgagacacccaga 400  Q
    |||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  39184953 ccaaccccatgaacctgcggaactgaccgaatggaagctgatctcagcaacaaaatcaccaaaaccagtaccgaacgtgaaagcacgtgagacacccaga 39185052  T
Q  401 gnnnnnnngtcgatatatacccaaaaccgc---caaaaaaccaagcaaccagcaccactacccaccgtg 466  Q
    |       ||||||||||||| |||||| |    |||||||||||||||||||||||||||||||||||    
T  39185053 g-aaaaaagtcgatatatacctaaaaccacaaaaaaaaaaccaagcaaccagcaccactacccaccgtg 39185120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 8730501 - 8730292
Alignment:
Q  15 caagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 114  Q
    |||||||||||||||||||| |||||||| ||||  | ||| ||||||||||||   |||| ||| |||| |  ||||||||||| | ||||||||||||    
T  8730501 caagacaacaaagttgaaagtctccaaggtaagcaacaacatcgccatagcattataaagaggcaaccacaataaatatacccaccaaccaacgatagag 8730402  T
Q  115 ccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgac 214  Q
     || |||||| ||||||||| | |||| || |||||||| |||||||| |||| | ||| | ||||||||||| |  ||| |||||||| ||||| ||||    
T  8730401 acagaactacactgccaaactgtctca-catgaaaacaggcagcaaca-aaaatagatccagaggaagacgaagccaaacaacaaaacacgggcagcgac 8730304  T
Q  215 gccagtttgaag 226  Q
    |||||| |||||    
T  8730303 gccagtctgaag 8730292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 42373752 - 42373538
Alignment:
Q  22 acaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagagccaaaac 121  Q
    ||||||||||| | ||||||||||| | || ||| ||||||||||||||||||||||||||||   |||||||||||||| |||| ||||||| ||||||    
T  42373752 acaaagttgaaggtctccaaggaaatcagcaacatcgccatagcattccgaagaagcagccacagtgaatatacccacaa-ccaaagatagagacaaaac 42373654  T
Q  122 tacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtt 221  Q
    ||||| | |||||| ||||||||||||||||| ||| |||| | |||| ||| ||||||||||||||||||||| ||||||| |||||||||| || |||    
T  42373653 tacgccgtcaaaccacctcaccaagaaaacaggcagtaacatagaacagatcgataggaagacgaaacacaacttcaaaacacgggcaacgacaccggtt 42373554  T
Q  222 tgaagcggaatcacaa 237  Q
    ||||||||||||||||    
T  42373553 tgaagcggaatcacaa 42373538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 17033101 - 17032737
Alignment:
Q  13 aacaagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatag 112  Q
    |||||||||||||||||||| | ||| ||||||||| |||||| |||||||||||||||||||||||||||||  ||||| ||||||||  || ||||||    
T  17033101 aacaagacaacaaagttgaaggtctctaaggaaagcagccacatcgccatagcattccgaagaagcagccacgttgaataaacccacaaatcagcgatag 17033002  T
Q  113 ag-ccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaa---aacatatctataggaagacgaaacacaactac-aaaacatggg 207  Q
    || | |||||||| ||||||||||| |||||||||||||||  |||||||| ||    ||||||||| ||||||||||||  |||| || ||||||  ||    
T  17033001 agacaaaaactacactgccaaaccgtctcaccaagaaaacaagcagcaacataatatcacatatctagaggaagacgaaatccaacaacaaaaacacagg 17032902  T
Q  208 caacgacgccagtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgtatgtcgccggagtaaac---aaccaa 304  Q
     |  ||| || || |||||| |||||||||||   |||| | |||||  || |||||||||| |||| | || |  |||| ||||||||||   ||||||    
T  17032901 tagtgaccccggtgtgaagcagaatcacaaccctgatcaaaaaaatgtggccgccggtgacaaggaggagacttccgtcgtcggagtaaacaaaaaccaa 17032802  T
Q  305 ccccattaacctgcggaactgacccaatcgaagccgatctcagcaacaaaatcaccaaaaccagt 369  Q
      |||| |||||||  |||||||  |||||| ||| ||||||||||||| |  ||||||||||||    
T  17032801 gtccatgaacctgcaaaactgactgaatcgacgccaatctcagcaacaacacaaccaaaaccagt 17032737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 19598180 - 19597952
Alignment:
Q  15 caagacaacaaagttgaaagactccaaggaaagcggcca-caccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgataga 113  Q
    ||||||||| | ||| || | ||||||||||||| || | || | ||||||||||| |||||| || |||| |||||||||| ||||| ||| ||| |||    
T  19598180 caagacaacgaggtttaatgtctccaaggaaagcagcaaacatcaccatagcattctgaagaatcaaccacaaagaatatactcacaaaccatcgaaaga 19598081  T
Q  114 gccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaac 211  Q
    | ||||  ||||||  ||||||| |||| |||||||| ||| ||||||| |||| ||| | | | ||||||| ||||| |||| ||| |||| |||||||    
T  19598080 gacaaaggctacgcctccaaaccacctcgccaagaaa-caggcagcaacccaaacacaaaccaaaaggaagatgaaacccaacaacagaacacgggcaac 19597982  T
Q  212 gacgccagtttgaagcggaatcacaaccta 241  Q
    |||||| || ||||| |||| |||||||||    
T  19597981 gacgccggtctgaagtggaaacacaaccta 19597952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 41919966 - 41919898
Alignment:
Q  171 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 239  Q
    ||||| ||||||| ||||  | || |||||||| ||||||||||||  ||||||||||||| |||||||    
T  41919966 atctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacc 41919898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 25505406 - 25505615
Alignment:
Q  15 caagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 114  Q
    |||||||||||||||||||| |||||||| ||||  | ||| ||||||||||||   |||| ||| |||| |  ||||||||||| | ||||||||||||    
T  25505406 caagacaacaaagttgaaagtctccaaggtaagcaacaacatcgccatagcattataaagaggcaaccacaataaatatacccaccaaccaacgatagag 25505505  T
Q  115 ccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgac 214  Q
     || |||||| ||||||||| | |||| || |||||||| |||||||| |||| | ||| | ||||||||||| |  ||| |||||||| ||||| ||||    
T  25505506 acagaactacactgccaaactgtctca-catgaaaacaggcagcaaca-aaaatagatccagaggaagacgaagccaaacaacaaaacacgggcagcgac 25505603  T
Q  215 gccagtttgaag 226  Q
    |||||| |||||    
T  25505604 gccagtctgaag 25505615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 22885907 - 22886124
Alignment:
Q  15 caagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 114  Q
    |||||||||||  ||||||| ||| ||||||||| |  ||| |||| ||||||| ||||||||||||||| | |||||||||||||| | |  |||||||    
T  22885907 caagacaacaagattgaaagtctctaaggaaagcaggaacatcgccttagcatttcgaagaagcagccacaacgaatatacccacaaactagtgatagag 22886006  T
Q  115 cca-aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacaca-aaacatatctataggaagacgaaacacaactacaaaacatgggcaacg 212  Q
      | |||| |||| |||||||| |||||||||| |||||  ||||||||||   ||||||| | ||||||| ||||| |||| |||||||| ||  | ||    
T  22886007 atagaaaccacgccgccaaaccacctcaccaag-aaacaagcagcaacacagttacatatcaagaggaagatgaaacccaacaacaaaacacggatagcg 22886105  T
Q  213 acgccagtttgaagcggaa 231  Q
    |||||||| ||||||||||    
T  22886106 acgccagtctgaagcggaa 22886124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 246
Target Start/End: Original strand, 31902910 - 31903036
Alignment:
Q  120 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 218  Q
    ||||||| ||||||  |||||| ||||||| || |||||||||| || | | ||||| ||||||||||||| |||| |||||||| ||||| |||||||     
T  31902910 actacgccgccaaatagcctcagcaagaaa-caaacagcaacactaacatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccg 31903008  T
Q  219 gtttgaagcggaatcacaacctaaatca 246  Q
    ||||||||||||| ||||||||| ||||    
T  31903009 gtttgaagcggaaacacaacctagatca 31903036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 275
Target Start/End: Original strand, 39339357 - 39339512
Alignment:
Q  120 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 218  Q
    ||||||| |||||||  ||||||||||||| |||||||||||||||| | | ||||| ||||||| ||||  |||| |||||||| | ||| ||||| |     
T  39339357 actacgccgccaaacatcctcaccaagaaa-cagacagcaacacaaatatagatctagaggaagaggaaatccaacaacaaaacacgagcagcgacgtcg 39339455  T
Q  219 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 275  Q
    |||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  39339456 gtttgaagtgaaaacacaaccaaaatcatagaaaggcggccgccggtgacaaggaga 39339512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 16501300 - 16501182
Alignment:
Q  128 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 226  Q
    |||||||||||||||||||||||||||| || ||||||| ||| || || |||||||| |||  |||| ||| |||||||||| ||||||| ||||||||    
T  16501300 gccaaaccgcctcaccaagaaaacagacggccacacaaacacaaatttagaggaagactaaaaccaacaacacaacatgggcagcgacgccggtttgaag 16501201  T
Q  227 cggaatcacaacctaaatc 245  Q
     |||||||||||| |||||    
T  16501200 tggaatcacaacccaaatc 16501182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 29 - 231
Target Start/End: Original strand, 46699364 - 46699566
Alignment:
Q  29 tgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagagcca-aaactacgct 127  Q
    |||||| ||| ||||||||| || ||| | ||||| ||||||||||||||||||| |  |||| ||||||||| ||| ||||| ||  | |||||||||     
T  46699364 tgaaagtctcgaaggaaagcagcaacatcaccataacattccgaagaagcagccatggtgaatttacccacaaaccagcgataaagatataaactacgcc 46699463  T
Q  128 gccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagc 227  Q
    |||||||| |||||||||| | |||| || ||||  || ||| ||| ||||||||| |||   |||| |||| ||| ||||| |||||||  ||||||||    
T  46699464 gccaaaccacctcaccaag-acacaggcatcaaccaaacacagatcaataggaagatgaattccaacaacaatacacgggcagcgacgccgatttgaagc 46699562  T
Q  228 ggaa 231  Q
    ||||    
T  46699563 ggaa 46699566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 30963947 - 30963879
Alignment:
Q  171 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 239  Q
    ||||| ||||||||||||  |||| |||||||| ||||| ||||||| |||||||| |||| |||||||    
T  30963947 atctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaaccacaacc 30963879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 12295612 - 12295557
Alignment:
Q  59 ccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 114  Q
    ||||||||||| |||||||||||||||  |||||||||||||| ||| | ||||||    
T  12295612 ccatagcattctgaagaagcagccacggtgaatatacccacaaaccatcaatagag 12295557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 79 - 239
Target Start/End: Complemental strand, 37792908 - 37792747
Alignment:
Q  79 agccacgaagaatatacccacaagccaacgatagagcca-aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctat 176  Q
    |||||||| ||||| |||||||| ||||||| |||| || ||||||||| ||||||||  |  ||||||||| |||||||||||||||| ||  ||| |     
T  37792908 agccacgatgaataaacccacaaaccaacgacagagacagaaactacgccgccaaaccagccaaccaagaaa-cagacagcaacacaaacacggatcaag 37792810  T
Q  177 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 239  Q
    || |||| ||||| ||||  ||||||| || |||||||||| ||||||||||||| |||||||    
T  37792809 agaaagatgaaacccaacagcaaaacacggacaacgacgccggtttgaagcggaaacacaacc 37792747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 38485053 - 38484991
Alignment:
Q  177 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 239  Q
    |||||||||||||   || |||||||||||||| ||||||| ||||||||||||| |||||||    
T  38485053 aggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaacc 38484991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 275
Target Start/End: Original strand, 47326396 - 47326551
Alignment:
Q  120 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 218  Q
    ||||||| |||||||  |||||||||| |||||  |||||||||||| |   ||||| ||||||| ||||  |||| |||||||| ||||| |||| ||     
T  47326396 actacgccgccaaacatcctcaccaag-aaacaagcagcaacacaaatattgatctagaggaagaggaaatccaacaacaaaacacgggcagcgacaccg 47326494  T
Q  219 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 275  Q
     ||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  47326495 atttgaagtgaaaacacaaccgaaatcatagaaaggcggccgccggtgacaaggaga 47326551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 3420242 - 3420311
Alignment:
Q  177 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatca 246  Q
    |||||||||||||  ||| |||||||| | ||| ||||||| ||| ||||||||| ||||||||| ||||    
T  3420242 aggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatca 3420311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 12480402 - 12480298
Alignment:
Q  128 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagac-gaaacacaactacaaaacatgggcaacgacgccagtttgaa 225  Q
    |||||||||||||||||||||||||||  || ||||||| ||| ||| | |||||||| ||||  |||| |||||||| | ||| ||||||| |||||||    
T  12480402 gccaaaccgcctcaccaagaaaacagatggccacacaaatacagatc-agaggaagactgaaaaccaacaacaaaacacgagcagcgacgccggtttgaa 12480304  T
Q  226 gcggaa 231  Q
    | ||||    
T  12480303 gtggaa 12480298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 38305744 - 38305676
Alignment:
Q  171 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 239  Q
    ||||| ||||||||||||  |||| ||||||||  |||| | ||||| ||||||||||||| |||||||    
T  38305744 atctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaacc 38305676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 25595029 - 25595217
Alignment:
Q  16 aagacaacaaagttgaaagactccaa-ggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 114  Q
    |||||| | ||| |||||| |||||| ||||||| || ||| |||||| || |||| || | |||||||||   || ||||||| || | | ||||||||    
T  25595029 aagacagcgaagatgaaagtctccaaaggaaagcagcaacatcgccattgccttccaaaaatgcagccacggttaaaatacccataaacgagcgatagag 25595128  T
Q  115 ccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacac-aaaacatatctataggaagacgaaacacaactacaaaaca 203  Q
     | |||||||| |||||||||||||||||||| |||||  ||||||||| |||||| ||||| |||| ||||||||| ||| ||||||||    
T  25595129 acgaaactacgttgccaaaccgcctcaccaag-aaacaagcagcaacacaaaaacaaatctagaggatgacgaaacataacaacaaaaca 25595217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 231
Target Start/End: Complemental strand, 5556158 - 5555991
Alignment:
Q  66 attccgaagaagcagccacgaagaatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaa 165  Q
    |||||||||||||| |||    |||||||||||||| ||| ||| |||| |||||| | || ||| ||||||| ||||| |||||||  |||||||||||    
T  5556158 attccgaagaagcaaccatagtgaatatacccacaaaccagcgacagagacaaaacaatgcagcctaaccgccacaccatgaaaacaagcagcaacacaa 5556059  T
Q  166 a-acatatcta-taggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 231  Q
    | ||||||||| |  ||||||||| | |||| | | |||| ||||| ||||||| || ||||||||||    
T  5556058 acacatatctattttgaagacgaagcccaacaaaagaacacgggcagcgacgccggtctgaagcggaa 5555991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 241
Target Start/End: Original strand, 17501759 - 17501880
Alignment:
Q  120 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 218  Q
    |||||||||||||||  ||||||||| |||| ||  ||||||||||| | | ||||| ||||||||||||   ||| |||||||| || ||| |||| ||    
T  17501759 actacgctgccaaacatcctcaccaa-aaaataggaagcaacacaaatatagatctagaggaagacgaaatctaacaacaaaacacggacaatgacgtca 17501857  T
Q  219 gtttgaagcggaatcacaaccta 241  Q
    ||||||||||||| |||||||||    
T  17501858 gtttgaagcggaaacacaaccta 17501880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 228
Target Start/End: Original strand, 1653452 - 1653550
Alignment:
Q  130 caaaccgcctcaccaagaaaacagacagcaacacaaaacatatctat--aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagc 227  Q
    |||||| |||||| |||||| ||| |||||||||||| ||||  |||  ||||||||||||  |||| |||||||| ||||| ||||||| |||||||||    
T  1653452 caaacctcctcacgaagaaa-caggcagcaacacaaa-cataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagc 1653549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 92 - 244
Target Start/End: Complemental strand, 9519205 - 9519052
Alignment:
Q  92 atacccacaagccaacgatagagccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaac 189  Q
    |||||||||| ||| |||||| | ||||| |||| | ||||| || |||||||| ||||||| ||||||| ||||| ||| ||||| || ||||||||||    
T  9519205 atacccacaaaccagcgatagggacaaaaactacaccgccaacccacctcaccatgaaaaca-acagcaatacaaacacaaatctagagaaagacgaaac 9519107  T
Q  190 acaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaat 244  Q
     |||| |||||||| ||||| ||||||  ||||||||||| | ||||||| ||||    
T  9519106 ccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaat 9519052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 34866640 - 34866702
Alignment:
Q  177 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 239  Q
    ||||||||||||  |||| |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34866640 aggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccacaacc 34866702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 10551832 - 10551752
Alignment:
Q  152 agacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 231  Q
    ||||||||||||||| | | ||||| ||||||||||||| |||| ||||| || ||||| |||||||  ||||||||||||    
T  10551832 agacagcaacacaaacatagatctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaa 10551752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 34389590 - 34389658
Alignment:
Q  171 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 239  Q
    ||||| |||| |||||||  | || |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34389590 atctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacc 34389658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 12793664 - 12793553
Alignment:
Q  128 gccaaaccgcctcaccaagaaaacagacagcaacacaaaac-atatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 226  Q
    |||||||  ||||||||||||| ||||||||||||||||   | ||| | ||||||||||||  || |  ||||||| ||||||||||||||||||||||    
T  12793664 gccaaacaccctcaccaagaaa-cagacagcaacacaaatttagatccagaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaag 12793566  T
Q  227 cggaatcacaacc 239  Q
    || || |||||||    
T  12793565 cgaaaacacaacc 12793553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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