View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_29 (Length: 464)
Name: NF7721_low_29
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 8e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 10903034 - 10902817
Alignment:
| Q |
13 |
aatattgtagaaaaaattacccccgtcgtctattaacttaattttagataacgattatgttttttatctttctattcacgtcatctttgtcgccttgatc |
112 |
Q |
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| T |
10903034 |
aatattgtagaaaaaaatacccacgtcgtctattaacttaattttagataacgattatgttttttatctttttattcacgccatctttgtcgtcttgatc |
10902935 |
T |
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| Q |
113 |
aatttacatattgatcttcaagatttcgatttatgatttaatttcgatataagctcatattgtttaattctacagttcttcacttatgttttcatatgaa |
212 |
Q |
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| T |
10902934 |
aatttacatattgatctttaagatttcgatttatgatttaatttcgaaataagctcatattgtttaattctacagtttttcactcatgttttcatatgaa |
10902835 |
T |
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| Q |
213 |
ttctaaagttgatgtttg |
230 |
Q |
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| T |
10902834 |
ttttaaagttgatgtttg |
10902817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 317 - 448
Target Start/End: Complemental strand, 10902730 - 10902599
Alignment:
| Q |
317 |
aattttatccaattttattttacttgactttgtattaatgactaattttttgcacatatttgatgttgtaaactttttgcatgtgataatgtcgttgaaa |
416 |
Q |
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| T |
10902730 |
aattttatccaattttattttacttgactttgtattaatgactaattttttgcacatatttgatgttataaactttttgcatgtgataatgtcattgaaa |
10902631 |
T |
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| Q |
417 |
cacaaaccaaagtgactagattacagcacact |
448 |
Q |
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| T |
10902630 |
cacaaaccaaagtgactagattacagcacact |
10902599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 44533582 - 44533698
Alignment:
| Q |
110 |
atcaatttacatattgatcttcaagatttcgatttatgatttaatttcgatataagctcatattgtttaattctacagttcttcacttatgttttcatat |
209 |
Q |
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| T |
44533582 |
atcaatttgcatatggattttcaagattcaaatctatggttttatttcgatatgagctcttagtgttcaaatcttttgtccttcactcatgttttcatat |
44533681 |
T |
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| Q |
210 |
gaattctaaagttgatg |
226 |
Q |
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| T |
44533682 |
gaattttaaatttgatg |
44533698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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