View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_30 (Length: 463)
Name: NF7721_low_30
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 445
Target Start/End: Complemental strand, 26649257 - 26648814
Alignment:
| Q |
10 |
agatgaaggtgaaggagcttaaaatttgtaagcatctctttaaacatagcaacaaaatctccttttgttgatactcatacttattgtcnnnnnnnnnnnn |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26649257 |
agatgaaggtgaaggagcttaaaatttgtaagcatctctttaaacatagcaacaaaatctccttttgttgatactcatacttattgtcctctctctctct |
26649158 |
T |
|
| Q |
110 |
nnnnnnnnnaggtaaggattttcggaaatttttgaaaagctttgataaagaagatcgtactgatcagtcaaaactatataaaaaagaatcgttcaaacta |
209 |
Q |
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||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26649157 |
ctctc----aggtaaggattttcggaaatttttgaaaaactttgatgaagaagatcgtactgatcagtcaatactatataaaaaagaatcgttcaaacta |
26649062 |
T |
|
| Q |
210 |
aagccgatttatccagatgaggttgtcgatgacgattataaaactaaagtcattgaaattgaaggatttaaatggtattcaactttcttaattttttatt |
309 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
26649061 |
aagccgatttatccagatgaggttgttgatgacgattataaaactaaagtcattgaaattggaggatttaaagggtattcaactttcttaattttttatt |
26648962 |
T |
|
| Q |
310 |
ttatgtagtcaagagtgaataattgtaaagattgatatgccaatacaggaattgcacagctgttcatactggaaccttgttgaaatttg----------- |
398 |
Q |
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| T |
26648961 |
ttatgtagtcaagagtgaataattgtaaagattgatatgccaatacaggaattgcacagctgttcatactggaaccttgttgaaatttgatttgaaattt |
26648862 |
T |
|
| Q |
399 |
-atttatctgctgacgacaacaatccagtgttgaacttttatgtactg |
445 |
Q |
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| T |
26648861 |
gatttatctgctgacgacaacaatccagtgttgaaattttatgtactg |
26648814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 278 - 341
Target Start/End: Original strand, 13684123 - 13684186
Alignment:
| Q |
278 |
taaatggtattcaactttcttaattttttattttatgtagtcaagagtgaataattgtaaagat |
341 |
Q |
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| T |
13684123 |
taaatggtatgcaactttcttaattttctattttatatattgaagagtgaataattgtaaagat |
13684186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 22192197 - 22192134
Alignment:
| Q |
278 |
taaatggtattcaactttcttaattttttattttatgtagtcaagagtgaataattgtaaagat |
341 |
Q |
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| T |
22192197 |
taaatggtatgcaaatttcttaattttctattttatatattcaagagtgaataattgtaaagat |
22192134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 36996093 - 36996030
Alignment:
| Q |
278 |
taaatggtattcaactttcttaattttttattttatgtagtcaagagtgaataattgtaaagat |
341 |
Q |
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|||||||||| |||||||||||||||| |||||||| || | |||||||||||||||||||||| |
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| T |
36996093 |
taaatggtatgcaactttcttaattttctattttatatattgaagagtgaataattgtaaagat |
36996030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 37006035 - 37005973
Alignment:
| Q |
278 |
taaatggtattcaactttcttaattttttattttatgtagtcaagagtgaataattgtaaagat |
341 |
Q |
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|||||||| | |||||||||||||||| ||||| || || |||||||||||||||||||||||| |
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| T |
37006035 |
taaatggtgtgcaactttcttaattttctattt-atatattcaagagtgaataattgtaaagat |
37005973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 36996332 - 36996296
Alignment:
| Q |
37 |
gtaagcatctctttaaacatagcaacaaaatctcctt |
73 |
Q |
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| T |
36996332 |
gtaagcatctctttaaacatagcaagaagatctcctt |
36996296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 8598937 - 8598897
Alignment:
| Q |
35 |
ttgtaagcatctctttaaacatagcaacaaaatctcctttt |
75 |
Q |
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| T |
8598937 |
ttgtaagcatctctttaaacacagcaacaaaatctcctttt |
8598897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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