View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7721_low_31 (Length: 459)
Name: NF7721_low_31
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 40 - 443
Target Start/End: Complemental strand, 39846442 - 39846038
Alignment:
| Q |
40 |
tcaattaactctgttcatgcctcattgttagtttcaaactttattaaagttatgaaatattataatttacacaaatcaattaattatttgacagcaattt |
139 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
39846442 |
tcaattaactctgttcatgcttcattgttactttcaaactttattaaagttatgaaatattataatttacacaaaacaattaattatttgaccgcaattt |
39846343 |
T |
|
| Q |
140 |
aattaacttcaatggaccaacaacattggttggctgggctgttttaccccagttagtctgggcacatgtccagactcaacccataagaaacttgacctgt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39846342 |
aattaacttcaatggaccaacaacattggttggccgggcagttttaccccagctagtctggacacatgtccagactcaacccataagaaacttgacatgt |
39846243 |
T |
|
| Q |
240 |
ggtgacagctgaaattcataactgtatggttaattttggtagctaaatgtgcttctgata-ttttttcaataaaaatataatcaaaagttttcctctgga |
338 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39846242 |
ggtgacagctgaaatttattactgtatggttaatttcggtagctaaatgtgcttctgacatttttttcaataaaaatataatcaaaagttttcctctggc |
39846143 |
T |
|
| Q |
339 |
tgtgaaagccttaagcatgtgccaaacaaacagcagaggtttttagtatacaatgatctcatcatttctcttctgaatcaaacccaaaaatagaaatttt |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39846142 |
tgtgaaagccttaagcatgtgccaaacaaacagcagaggtttttagtatacaatgatctcatcatttctcttctgaatcaaacccaaaaatagaaatttt |
39846043 |
T |
|
| Q |
439 |
aaaag |
443 |
Q |
| |
|
||||| |
|
|
| T |
39846042 |
aaaag |
39846038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University