View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_32 (Length: 446)
Name: NF7721_low_32
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 660796 - 660455
Alignment:
| Q |
19 |
aacaatacgtctttcggagaagaatgatacactatttattgaaaaccagttgtgaaagttcagcaattctctataataggagagataaaagcgtaaagag |
118 |
Q |
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| T |
660796 |
aacaatacgtctttcggagaagaatgatacactatt-attgaaaaccagttgtgaaagttcagcaattctctataattggagagataaaagcataaagag |
660698 |
T |
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| Q |
119 |
aatcaaaaaatcttggtggttcaatgtccaggattatgttgaaagcttggttacgt-----------------catattacaatggtttacttgtttaga |
201 |
Q |
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| T |
660697 |
aatcaaaaaatcttggtggttcaatgtccaggattatgttgaaagcttggttacgtattgttgaatgtaagttcatattacaatggtttacttgtttaga |
660598 |
T |
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| Q |
202 |
ccttgattatctgtcatgaatttaagtatgaatatatttttgcaaaattaatatatgttggaagatttgttatagttctgtttatcccccatgttacgtg |
301 |
Q |
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| T |
660597 |
ccttgattatctgtcatgaatttaagtatgaatatatttttgcaaaattaatatatgttggaagatttgctatagttctgtttatcccccatgttacgtg |
660498 |
T |
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| Q |
302 |
tggtgcaggcttctattcatggcggcgcgattggaggttgttg |
344 |
Q |
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| T |
660497 |
tggtgcaggcttctattcatggcggcgcgattggaggttgttg |
660455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 660458 - 660414
Alignment:
| Q |
359 |
gttggcaagctcacgaccaaacatctctaattagattaatgaaca |
403 |
Q |
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| T |
660458 |
gttggcaagctcacgaccaaacatctctaattagattaatgaaca |
660414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 22070781 - 22070827
Alignment:
| Q |
197 |
ttagaccttgattatctgtcatgaatttaagtatgaatatatttttg |
243 |
Q |
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| T |
22070781 |
ttagagcttgattatctgtcctaaatttaagtatgaatatatttttg |
22070827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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