View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_33 (Length: 443)
Name: NF7721_low_33
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 7e-96; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 128 - 424
Target Start/End: Original strand, 30887766 - 30888076
Alignment:
| Q |
128 |
taatgaactccggaacgatacaaagctttctcaagggaaagagcattttagttattggcacaacaggcttcttagcaaaaggtactagctatatatata- |
226 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
30887766 |
taatgaactctggaacgatacatagctttctcaagggaaagagcattttagtaatcggcacaacaggtttcttagcaaaaggtaccagctatatatatat |
30887865 |
T |
|
| Q |
227 |
---------attcatgtaaaatatcattattattgt---caccttttatgnnnnnnnttaccatgcatat--tatagttacgtatagttgaatttgtctt |
312 |
Q |
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| T |
30887866 |
atctatataattcatttaaactatcattattattattatcaacttttatgaaaaaa-ttaccatgcatatattatagttacgtatagttgaatttatctt |
30887964 |
T |
|
| Q |
313 |
tatgtgcagtttttgtggaaaaaatactaagaattcaaccagagatacaacagttgtatcttcttgtaagagcttccaacaatgatttagcatcacaacg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30887965 |
tatgtgcagtttttgtggaaaaaatactaagaattcaaccagagatacaacagttgtatcttcttgtaagagcttccaacaatgatttagcatcacaacg |
30888064 |
T |
|
| Q |
413 |
gttgcaaaatga |
424 |
Q |
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||||||||||| |
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| T |
30888065 |
cttgcaaaatga |
30888076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 30887648 - 30887709
Alignment:
| Q |
32 |
aacttacaagccccatctataaataagtcaatgacaatcattacaaaataacaatctatacgt |
94 |
Q |
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| T |
30887648 |
aacttacaagcccg-tctataaataactcaatgataatcattacaaaataacactctatacgt |
30887709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 19896501 - 19896416
Alignment:
| Q |
129 |
aatgaactccggaacgatacaaagctttctcaagggaaagagcattttagttattggcacaacaggcttcttagcaaaaggtacta |
214 |
Q |
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| T |
19896501 |
aatgaactggggaaccatgcaaaactttatgaagggaaaaaccattttagtgacaggcacaacaggcttcttagcgaaaggtacta |
19896416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 388
Target Start/End: Complemental strand, 19896234 - 19896163
Alignment:
| Q |
317 |
tgcagtttttgtggaaaaaatactaagaattcaaccagagatacaacagttgtatcttcttgtaagagcttc |
388 |
Q |
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| T |
19896234 |
tgcagtttttgtggaaaagatattacggattcaaccagagatacaaaagctttaccttctcgtgagagcttc |
19896163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 19655992 - 19656076
Alignment:
| Q |
304 |
atttgtctttatgtgcagtttttgtggaaaaaatactaagaattcaaccagagatacaacagttgtatcttcttgtaagagcttc |
388 |
Q |
| |
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|||| |||||||||||||||||||| ||||| |||||||| || |||||||||||| || | ||||||| || ||||||||||| |
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| T |
19655992 |
atttatctttatgtgcagtttttgttgaaaagatactaagcatccaaccagagataaaaaaactgtatctactcgtaagagcttc |
19656076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 15742903 - 15742987
Alignment:
| Q |
304 |
atttgtctttatgtgcagtttttgtggaaaaaatactaagaattcaaccagagatacaacagttgtatcttcttgtaagagcttc |
388 |
Q |
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|||| ||||||| |||||||||| ||||| |||||||| || ||||||||||||||| | ||||||| || ||||||||||| |
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| T |
15742903 |
atttatctttatatgcagtttttactgaaaagatactaaggatccaaccagagatacaaaaactgtatctactcgtaagagcttc |
15742987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 19528567 - 19528626
Alignment:
| Q |
153 |
ctttctcaagggaaagagcattttagttattggcacaacaggcttcttagcaaaaggtac |
212 |
Q |
| |
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|||||| || ||||||| ||||||||| | |||||||||||| |||||||| |||||||| |
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| T |
19528567 |
ctttctgaaaggaaagaccattttagtgactggcacaacagggttcttagccaaaggtac |
19528626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 388
Target Start/End: Original strand, 19528704 - 19528775
Alignment:
| Q |
317 |
tgcagtttttgtggaaaaaatactaagaattcaaccagagatacaacagttgtatcttcttgtaagagcttc |
388 |
Q |
| |
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|||||||||||||||||| ||| || | ||||||||||| |||||| || | |||||||| |||||||||| |
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| T |
19528704 |
tgcagtttttgtggaaaagatattacggattcaaccagatatacaaaagctttatcttctcataagagcttc |
19528775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 19872801 - 19872846
Alignment:
| Q |
317 |
tgcagtttttgtggaaaaaatactaagaattcaaccagagatacaa |
362 |
Q |
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|||||||||||| ||||| ||| ||||||| ||||||||||||||| |
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| T |
19872801 |
tgcagtttttgttgaaaagatattaagaatccaaccagagatacaa |
19872846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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