View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7721_low_34 (Length: 439)
Name: NF7721_low_34
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_34 |
 | |
|
| [»] scaffold0059 (1 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] scaffold0554 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 432
Target Start/End: Original strand, 15885558 - 15885970
Alignment:
| Q |
20 |
aggagatacatcgagtaccaccatagtttgggcaatggcagagttggtaagggatgaaagagtgatgaagaaagcacaagatgaggtaagagaaatattc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
15885558 |
aggagatacatcgagtaccaccatagtttgggcaatggcagagttggtaagggatgaaagagtgatgaagaaagcacaagatgaagtaagagaaatgttc |
15885657 |
T |
|
| Q |
120 |
aacacaaaaggaattgttggtgagaactatattaatgagctcacttatttgaagtcagttgtgaaagagaccttaaggttacaccctccagctcctcttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15885658 |
aacacaaaaggaattgttggtgagaactatattaatgagctcacttatttgaagtcagttgtgaaagagaccttaaggttacaccctccagctcctcttt |
15885757 |
T |
|
| Q |
220 |
tacttccaagagaatgtgagcaagcatgtgagattgatggttttcatataccaatcaaaagcaaggtaataatcaatgcgtgggcgattggaagagatcc |
319 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||| ||| ||||||| |||||||||||||||||||| |
|
|
| T |
15885758 |
tacttccaagagaatgtgaacaagcatgtgagattgatggttatcatataccaaccaaaagcaaggtgatagtcaatgcatgggcgattggaagagatcc |
15885857 |
T |
|
| Q |
320 |
aaagtattggactgacccagagaggttttatccagagagattcattggtagctctattgactataaagggaataattttgagtacattccttttggttct |
419 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15885858 |
aaagtattggactgaaccagagaggttttatccagagagattcattggtagctctattgactataaagggaataattttgagtacattccttttggttct |
15885957 |
T |
|
| Q |
420 |
ggaagaataatat |
432 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
15885958 |
ggaagaagaatat |
15885970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 42 - 432
Target Start/End: Complemental strand, 12610287 - 12609897
Alignment:
| Q |
42 |
atagtttgggcaatggcagagttggtaagggatgaaagagtgatgaagaaagcacaagatgaggtaagagaaatattcaacacaaaaggaattgttggtg |
141 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| | |
|
|
| T |
12610287 |
atagtttgggcaatgtcagagttggtaagggataaaagagtgatgaagaaagcacaagatgaggtaagagatatattcaacatgaaaggaaatgttgaag |
12610188 |
T |
|
| Q |
142 |
agaactatattaatgagctcacttatttgaagtcagttgtgaaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgtgagca |
241 |
Q |
| |
|
| || | ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| || |
|
|
| T |
12610187 |
aaaattgtataaatgaactcacttatttaaagtcagttgtgaaagagaccttaaggttacatcctccaggtcctcttttacttccaagagaatgtggaca |
12610088 |
T |
|
| Q |
242 |
agcatgtgagattgatggttttcatataccaatcaaaagcaaggtaataatcaatgcgtgggcgattggaagagatccaaagtattggactgacccagag |
341 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
12610087 |
agcatgtgagattgatgggtatcgtataccaatcaaaagcaaggtgatagtcaatgcatgggcgattggaagagatccaaagtactggactgaaccagag |
12609988 |
T |
|
| Q |
342 |
aggttttatccagagagattcattggtagctctattgactataaagggaataattttgagtacattccttttggttctggaagaataatat |
432 |
Q |
| |
|
| ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
12609987 |
aagttttatccggagagattcatcggtagctctattgactacaaagggaataattttgagtacattccctttggtgctggaagaagaatat |
12609897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 39 - 439
Target Start/End: Complemental strand, 12637383 - 12636986
Alignment:
| Q |
39 |
accatagtttgggcaatggcagagttggtaagggatgaaagagtgatgaagaaagcacaagatgaggtaagagaaatattcaacacaaaaggaattgttg |
138 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| || ||| |||||||||||| ||||||| ||||| |
|
|
| T |
12637383 |
accatagtttgggcaatggcagagttagtaagggatccaagagtgatgaagaaagcacaatatgaagtgagaaaaatattcaacaagaaaggaactgttg |
12637284 |
T |
|
| Q |
139 |
gtgagaactatattaatgagctcacttatttgaagtcagttgtgaaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgtga |
238 |
Q |
| |
|
|||| |||||||| ||||| ||| |||||||||| ||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
12637283 |
gtgaaaactatataaatgaactcgaatatttgaagttagtagtgaaagagactctaaggttacaccctccaactcctcttttactt---agagaatgtgg |
12637187 |
T |
|
| Q |
239 |
gcaagcatgtgagattgatggttttcatataccaatcaaaagcaaggtaataatcaatgcgtgggcgattggaagagatccaaagtattggactgaccca |
338 |
Q |
| |
|
||||||||||| ||||| || | |||||||||| |||||| ||||| ||| | ||||| ||| | ||||| |||||||||||||| |||||||| ||| |
|
|
| T |
12637186 |
acaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtgatagtaaatgcatggacaattggtagagatccaaagtactggactgaacca |
12637087 |
T |
|
| Q |
339 |
gagaggttttatccagagagattcattggtagctctattgactataaagggaataattttgagtacattccttttggttctggaagaataatatacccag |
438 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| | ||||||| ||||| ||||| |
|
|
| T |
12637086 |
gagaggtttcatccagagagattcattggtagctctattgactacaaaggaaataattttgagtacattccttttggtgcaggaagaagaatatgcccag |
12636987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 43 - 439
Target Start/End: Complemental strand, 62534 - 62138
Alignment:
| Q |
43 |
tagtttgggcaatggcagagttggtaagggatgaaagagtgatgaagaaagcacaagatgaggtaagagaaatattcaacacaaaaggaattgttggtga |
142 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || |||||||||| ||||| || ||| | ||| ||| |
|
|
| T |
62534 |
tagtttgggcaatggcagagttggtaagagatccaagagtgatgaagaaagcacaagatgaagtgagagaaatatacaacatgaagggagcttttgatga |
62435 |
T |
|
| Q |
143 |
gaactatattaatgagctcacttatttgaagtcagttgtgaaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgt-gagca |
241 |
Q |
| |
|
| | ||| |||| |||| || |||||||| |||||||||||||| | ||||||||||| |||| | ||||||||||||||||||||||| ||| | |
|
|
| T |
62434 |
aagttgtatgcatgaactcaaatacgtgaagtcaattgtgaaagagaccctgaggttacaccccccaggtgctcttttacttccaagagaatgtagag-a |
62336 |
T |
|
| Q |
242 |
agcatgtgagattgatggttttcatataccaatcaaaagcaaggtaataatcaatgcgtgggcgattggaagagatccaaagtattggactgacccagag |
341 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| |||| ||| | ||| | ||||| ||||| || ||||||||||||| ||| ||||| || |||||| |
|
|
| T |
62335 |
agcatgtgagattgatgggtatcatataccaatgaaaacaaagctgatagttaatgcatgggcaatcggaagagatccaaggtactggacggaaccagag |
62236 |
T |
|
| Q |
342 |
aggttttatccagagagattcattggtagctctattgactataaagggaataattttgagtacattccttttggttctggaagaataatatacccagg |
439 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||| |||||| || ||||| |||||| |
|
|
| T |
62235 |
aggttttatccagagagattcattggtagttctattgactacaacgggaataatttcgagtacattccttttggtgctggaaaaagaatatgcccagg |
62138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 38 - 439
Target Start/End: Complemental strand, 21780199 - 21779798
Alignment:
| Q |
38 |
caccatagtttgggcaatggcagagttggtaagggatgaaagagtgatgaagaaagcacaagatgaggtaagagaaatattcaacacaaaaggaattgtt |
137 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||||||||| |||| | |||||||||||||||||||| || |||||| | ||||| | ||||||| ||| |
|
|
| T |
21780199 |
caccatagattgggcaatggtagaaatggtaagggatccaagaataatgaagaaagcacaagatgaagtgagagaagttttcaaaatgaaaggaagggtt |
21780100 |
T |
|
| Q |
138 |
ggtgagaactatattaatgagctcacttatttgaagtcagttgtgaaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgtg |
237 |
Q |
| |
|
| ||| || | || ||||| |||| ||||||||| |||||||| ||||| ||||||||| ||||||||||||| |||||||| | || ||||||||| |
|
|
| T |
21780099 |
gatgaaaattgcatcaatgaactcaattatttgaaatcagttgtcaaagaaaccttaaggctacaccctccagcacctcttttgttaccgagagaatgta |
21780000 |
T |
|
| Q |
238 |
agcaagcatgtgagattgatggttttcatataccaatcaaaagcaaggtaataatcaatgcgtgggcgattggaagagatccaaagtattggactgaccc |
337 |
Q |
| |
|
||||||||||| || |||||| || || || || || | ||||| ||||||||||| ||||| |||| |||||||||||| || |||||||| || |
|
|
| T |
21779999 |
gtcaagcatgtgatataaatggttaccacattccgattaagactaaggtgataatcaatgcttgggcaattgcaagagatccaaactactggactgaacc |
21779900 |
T |
|
| Q |
338 |
agagaggttttatccagagagattcattggtagctctattgactataaagggaataattttgagtacattccttttggttctggaagaataatataccca |
437 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||| |||||||| |||||||| |||||||||||||||||| |||||| | ||||||| ||||| |||| |
|
|
| T |
21779899 |
agagatgttttatccagagagattcatcgatagcgatattgactttaaagggagtaattttgagtacattccatttggtgccggaagaagaatatgccca |
21779800 |
T |
|
| Q |
438 |
gg |
439 |
Q |
| |
|
|| |
|
|
| T |
21779799 |
gg |
21779798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 426
Target Start/End: Complemental strand, 12438434 - 12438302
Alignment:
| Q |
294 |
aatgcgtgggcgattggaagagatccaaagtattggactgacccagagaggttttatccagagagattcattggtagctctattgactataaagggaata |
393 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||||| ||| ||| | |||| |||| |||||||| |||| | | | ||||| || |||||| || |
|
|
| T |
12438434 |
aatgcatgggcaattggaagagacccaaagtattggaatgaaggagaaaagtttaatcctgagagatttattgattgtccaattgattacaaagggtcta |
12438335 |
T |
|
| Q |
394 |
attttgagtacattccttttggttctggaagaa |
426 |
Q |
| |
|
|||| |||| || ||||||||| ||||||||| |
|
|
| T |
12438334 |
atttcgagtttataccttttggtgctggaagaa |
12438302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 5e-63; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 38 - 432
Target Start/End: Complemental strand, 23146306 - 23145912
Alignment:
| Q |
38 |
caccatagtttgggcaatggcagagttggtaagggatgaaagagtgatgaagaaagcacaagatgaggtaagagaaatattcaacacaaaaggaattgtt |
137 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||||| |||| |||| | ||||||||||||||||||||||| ||||| | ||||| | ||||||| ||| |
|
|
| T |
23146306 |
caccatagattgggcaatggtagaattggtaaaggatccaagaatcatgaagaaagcacaagatgaggtgagagaggttttcaaaatgaaaggaagggtt |
23146207 |
T |
|
| Q |
138 |
ggtgagaactatattaatgagctcacttatttgaagtcagttgtgaaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgtg |
237 |
Q |
| |
|
| ||| || | || ||||| |||| ||||||||| | |||||| ||||| ||||||||| ||||||||||||| |||||||| | || ||||||||| |
|
|
| T |
23146206 |
gatgaaaattgcatcaatgaactcaattatttgaaattagttgtcaaagaaaccttaaggctacaccctccagcacctcttttgttaccgagagaatgta |
23146107 |
T |
|
| Q |
238 |
agcaagcatgtgagattgatggttttcatataccaatcaaaagcaaggtaataatcaatgcgtgggcgattggaagagatccaaagtattggactgaccc |
337 |
Q |
| |
|
|||| |||||| || |||||| ||| ||||| || || | ||||| || ||||||| ||||| ||| |||||||||||| || |||||||| || |
|
|
| T |
23146106 |
gtcaagaatgtgatataaatggttatcacataccgattaagactaaggtgttagtcaatgcttgggcagttgcaagagatccaaactactggactgaacc |
23146007 |
T |
|
| Q |
338 |
agagaggttttatccagagagattcattggtagctctattgactataaagggaataattttgagtacattccttttggttctggaagaataatat |
432 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
23146006 |
agagaggttttatccagagagattcatcgacagcgatattgactataaagggagtaactttgagtacattccttttggtgctggaagaagaatat |
23145912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 38 - 439
Target Start/End: Complemental strand, 23036556 - 23036155
Alignment:
| Q |
38 |
caccatagtttgggcaatggcagagttggtaagggatgaaagagtgatgaagaaagcacaagatgaggtaagagaaatattcaacacaaaaggaattgtt |
137 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| || |||| | |||||||||||||||| |||||| ||||| | ||||| | ||||||| || |
|
|
| T |
23036556 |
caccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtc |
23036457 |
T |
|
| Q |
138 |
ggtgagaactatattaatgagctcacttatttgaagtcagttgtgaaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgtg |
237 |
Q |
| |
|
| ||||| | ||| || || |||| ||||||||| ||||| || ||||| ||| | ||||||||||||||| | |||||||| || |||||||| |||| |
|
|
| T |
23036456 |
gaagagaattgtatcaacgaactcatttatttgaaatcagtcgtcaaagaaaccctgaggttacaccctccaacacctcttttgctaccaagagagtgtg |
23036357 |
T |
|
| Q |
238 |
agcaagcatgtgagattgatggttttcatataccaatcaaaagcaaggtaataatcaatgcgtgggcgattggaagagatccaaagtattggactgaccc |
337 |
Q |
| |
|
|||||||||| ||| |||||| ||| ||||| || || || ||||||| ||| ||||| ||||| |||| |||||||||||| || |||||||| || |
|
|
| T |
23036356 |
ttcaagcatgtgtgataaatggttatcacatacctattaagagtaaggtaacaataaatgcttgggcaattgcaagagatccaaattactggactgaacc |
23036257 |
T |
|
| Q |
338 |
agagaggttttatccagagagattcattggtagctctattgactataaagggaataattttgagtacattccttttggttctggaagaataatataccca |
437 |
Q |
| |
|
|||||| |||||||| ||||||||||| | ||| |||||||||| ||||||| ||| ||||||||||||||||||||| | ||||||| ||||| |||| |
|
|
| T |
23036256 |
agagagattttatcccgagagattcatcgacagcgctattgactacaaagggagtaactttgagtacattccttttggtgccggaagaagaatatgccca |
23036157 |
T |
|
| Q |
438 |
gg |
439 |
Q |
| |
|
|| |
|
|
| T |
23036156 |
gg |
23036155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 38 - 439
Target Start/End: Complemental strand, 23039427 - 23039026
Alignment:
| Q |
38 |
caccatagtttgggcaatggcagagttggtaagggatgaaagagtgatgaagaaagcacaagatgaggtaagagaaatattcaacacaaaaggaattgtt |
137 |
Q |
| |
|
|||||||| |||||||||| ||| || |||||||| |||| | ||||||||||| ||||||||||| ||||| | ||||| | ||||||| ||| |
|
|
| T |
23039427 |
caccatagactgggcaatggtagaaatgataagggatccaagaataatgaagaaagcgcaagatgaggtgagagaggttttcaaaatgaaaggaagggtt |
23039328 |
T |
|
| Q |
138 |
ggtgagaactatattaatgagctcacttatttgaagtcagttgtgaaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgtg |
237 |
Q |
| |
|
| ||| || | || ||||| |||| |||||||||||||||||| ||||| ||| | ||||||||||||||| | |||||||| || |||||||||||| |
|
|
| T |
23039327 |
gatgaaaattgcatcaatgaactcaattatttgaagtcagttgtcaaagaaaccctgaggttacaccctccaacacctcttttgctgccaagagaatgtc |
23039228 |
T |
|
| Q |
238 |
agcaagcatgtgagattgatggttttcatataccaatcaaaagcaaggtaataatcaatgcgtgggcgattggaagagatccaaagtattggactgaccc |
337 |
Q |
| |
|
||| |||||||||| |||||| ||| ||||| || || || ||||| ||| ||||||| ||||| |||| |||||||||||| || |||||||| || |
|
|
| T |
23039227 |
gtcaaacatgtgagataaatggttatcacatacctattaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaattactggactgagcc |
23039128 |
T |
|
| Q |
338 |
agagaggttttatccagagagattcattggtagctctattgactataaagggaataattttgagtacattccttttggttctggaagaataatataccca |
437 |
Q |
| |
|
||||| |||||||||||||||||| ||| ||| | |||||||||||||| | ||||| ||||||||||||||||||| | ||||||| ||||| |||| |
|
|
| T |
23039127 |
ggagagattttatccagagagattccttgacagcgccattgactataaaggaagtaattatgagtacattccttttggtgccggaagaagaatatgccca |
23039028 |
T |
|
| Q |
438 |
gg |
439 |
Q |
| |
|
|| |
|
|
| T |
23039027 |
gg |
23039026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 38 - 439
Target Start/End: Complemental strand, 23149144 - 23148743
Alignment:
| Q |
38 |
caccatagtttgggcaatggcagagttggtaagggatgaaagagtgatgaagaaagcacaagatgaggtaagagaaatattcaacacaaaaggaattgtt |
137 |
Q |
| |
|
|||||||| ||||||||||| |||| |||||| |||| |||| | ||||||||||||||||||||||| ||||| | ||||| | ||||||| ||| |
|
|
| T |
23149144 |
caccatagattgggcaatggtagagatggtaaaggatccaagaataatgaagaaagcacaagatgaggtgagagaggttttcaaaatgaaaggaaaggtt |
23149045 |
T |
|
| Q |
138 |
ggtgagaactatattaatgagctcacttatttgaagtcagttgtgaaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgtg |
237 |
Q |
| |
|
| ||| || | || ||||| |||| ||||||||| | |||||| ||||| ||||||||| |||||||||| || |||||||| | || ||||||||| |
|
|
| T |
23149044 |
gatgaaaattgcatcaatgaactcaattatttgaaattagttgtcaaagaaaccttaaggctacaccctccggcacctcttttgttaccgagagaatgta |
23148945 |
T |
|
| Q |
238 |
agcaagcatgtgagattgatggttttcatataccaatcaaaagcaaggtaataatcaatgcgtgggcgattggaagagatccaaagtattggactgaccc |
337 |
Q |
| |
|
||||| ||||| || |||||| ||| || || || || | || || ||||||||||| ||||| |||| ||||||| |||| || |||||||| || |
|
|
| T |
23148944 |
gtcaagcgtgtgatataaatggttatcacattccgattaagactaaagtgataatcaatgcttgggcaattgcaagagattcaaactactggactgaacc |
23148845 |
T |
|
| Q |
338 |
agagaggttttatccagagagattcattggtagctctattgactataaagggaataattttgagtacattccttttggttctggaagaataatataccca |
437 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| || |||||||||||||||||| | ||||||| ||||| |||| |
|
|
| T |
23148844 |
agagaggttttatccagagagattcattgaaagcgatattgactataaagggagtaacttcgagtacattccttttggtgccggaagaagaatatgccca |
23148745 |
T |
|
| Q |
438 |
gg |
439 |
Q |
| |
|
|| |
|
|
| T |
23148744 |
gg |
23148743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 38 - 416
Target Start/End: Complemental strand, 23024658 - 23024280
Alignment:
| Q |
38 |
caccatagtttgggcaatggcagagttggtaagggatgaaagagtgatgaagaaagcacaagatgaggtaagagaaatattcaacacaaaaggaattgtt |
137 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| | || |||| | |||||||||||||||| |||||| |||| || ||||| | ||||||| ||| |
|
|
| T |
23024658 |
caccatagattgggcaatggcagaaatggtaaagaatccaagaataatgaagaaagcacaagctgaggtgcgagagattttcaatatgaaaggaagggtt |
23024559 |
T |
|
| Q |
138 |
ggtgagaactatattaatgagctcacttatttgaagtcagttgtgaaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgtg |
237 |
Q |
| |
|
| ||||| | ||| ||||| || | ||||||||| ||| |||| ||||| ||| | |||||||||||||| || || |||||| | || |||||||||| |
|
|
| T |
23024558 |
gaagagaattgtatcaatgaacttaattatttgaaatcaattgtcaaagaaaccctgaggttacaccctccggcaccacttttaataccgagagaatgtg |
23024459 |
T |
|
| Q |
238 |
agcaagcatgtgagattgatggttttcatataccaatcaaaagcaaggtaataatcaatgcgtgggcgattggaagagatccaaagtattggactgaccc |
337 |
Q |
| |
|
||| ||||| |||| || |||| | | || |||| || | ||||| ||| ||||||| ||||| |||| |||||||||||| || ||||| || || |
|
|
| T |
23024458 |
ctcaatcatgtaagatagacggttatgacattccaactaagactaaggtgatagtcaatgcttgggcaattgcaagagatccaaattactggaccgaacc |
23024359 |
T |
|
| Q |
338 |
agagaggttttatccagagagattcattggtagctctattgactataaagggaataattttgagtacattccttttggt |
416 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||| |||||||| |||||||||||| |
|
|
| T |
23024358 |
agagaggttttatccagagagattcatcgatagtgatattgactataaagggagtaactttgagtatattccttttggt |
23024280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 38 - 439
Target Start/End: Complemental strand, 23140432 - 23140031
Alignment:
| Q |
38 |
caccatagtttgggcaatggcagagttggtaagggatgaaagagtgatgaagaaagcacaagatgaggtaagagaaatattcaacacaaaaggaattgtt |
137 |
Q |
| |
|
|||||||| ||||||||||| ||| || |||||||| |||| | |||||||||| ||||||||||| ||||| | ||||| | ||||||| ||| |
|
|
| T |
23140432 |
caccatagattgggcaatggtagaaatgataagggatccaagaataatgaagaaagtgcaagatgaggtgagagaggttttcaaaatgaaaggaagggtt |
23140333 |
T |
|
| Q |
138 |
ggtgagaactatattaatgagctcacttatttgaagtcagttgtgaaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgtg |
237 |
Q |
| |
|
| ||| || | || || |||||| ||||||||| ||| | || ||||| ||||| ||||||||| |||| | |||||||| || |||||||| |||| |
|
|
| T |
23140332 |
gatgaaaattgcatcaacgagctccattatttgaaatcaatcgtcaaagaaaccttgaggttacacactccggtgcctcttttgctaccaagagagtgtg |
23140233 |
T |
|
| Q |
238 |
agcaagcatgtgagattgatggttttcatataccaatcaaaagcaaggtaataatcaatgcgtgggcgattggaagagatccaaagtattggactgaccc |
337 |
Q |
| |
|
|||||||||||||| |||||| ||| |||||| | || | ||||| | ||||||| ||||| || | ||||||||||| || |||||||| || |
|
|
| T |
23140232 |
gtcaagcatgtgagatacatggttatcacataccatttaagactaaggtggtcgtcaatgcatgggcaatcgcgagagatccaaactactggactgaacc |
23140133 |
T |
|
| Q |
338 |
agagaggttttatccagagagattcattggtagctctattgactataaagggaataattttgagtacattccttttggttctggaagaataatataccca |
437 |
Q |
| |
|
||||| |||||||||||||||||||| || | | |||||||||||||||||| | ||||||||||||||||||||||| | ||| ||| ||||| |||| |
|
|
| T |
23140132 |
agagaaattttatccagagagattcatgggaaacactattgactataaagggagtgattttgagtacattccttttggtgcgggacgaagaatatgccca |
23140033 |
T |
|
| Q |
438 |
gg |
439 |
Q |
| |
|
|| |
|
|
| T |
23140032 |
gg |
23140031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 153 - 432
Target Start/End: Complemental strand, 23017333 - 23017054
Alignment:
| Q |
153 |
aatgagctcacttatttgaagtcagttgtgaaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgtgagcaagcatgtgaga |
252 |
Q |
| |
|
||||| |||| |||| |||| |||||||| ||||| ||| | || ||||| ||| ||| |||||||| || ||||||||||||| |||||||||||| |
|
|
| T |
23017333 |
aatgaactcagttatctgaaatcagttgtcaaagaaacccttagattacatccttcagtacctcttttgctaccaagagaatgtggtaaagcatgtgaga |
23017234 |
T |
|
| Q |
253 |
ttgatggttttcatataccaatcaaaagcaaggtaataatcaatgcgtgggcgattggaagagatccaaagtattggactgacccagagaggttttatcc |
352 |
Q |
| |
|
| |||||| ||| |||||| | || | ||||| ||||| ||||| ||||| || | |||||||||||| || |||||||| ||||||| ||||||||| |
|
|
| T |
23017233 |
tacatggttatcacataccagttaagactaaggtgataattaatgcttgggcaatcgcaagagatccaaactactggactgaaccagagaagttttatcc |
23017134 |
T |
|
| Q |
353 |
agagagattcattggtagctctattgactataaagggaataattttgagtacattccttttggttctggaagaataatat |
432 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||| ||| || || ||||||||||||||| |||||||| ||||| |
|
|
| T |
23017133 |
agagagattcattgacaacggtattgactataaagggagtaacttcgaatacattccttttggtggtggaagaagaatat |
23017054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 201 - 426
Target Start/End: Complemental strand, 22972174 - 22971949
Alignment:
| Q |
201 |
caccctccagctcctcttttacttccaagagaatgtgagcaagcatgtgagattgatggttttcatataccaatcaaaagcaaggtaataatcaatgcgt |
300 |
Q |
| |
|
|||||||| | |||||||||| | ||||| | |||| ||||| |||||||||||||||| ||| |||||||||||||| | ||| ||||||||||| | |
|
|
| T |
22972174 |
caccctcctggtcctcttttagtaccaagggtgtgtggacaagcttgtgagattgatggttatcacataccaatcaaaagtagggtgataatcaatgctt |
22972075 |
T |
|
| Q |
301 |
gggcgattggaagagatccaaagtattggactgacccagagaggttttatccagagagattcattggtagctctattgactataaagggaataattttga |
400 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||| ||||| | ||||||||| || ||||| |||| ||| ||| |||| | ||||| | |||||||| |
|
|
| T |
22972074 |
gggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctcttgatttcaaaggaacaaattttga |
22971975 |
T |
|
| Q |
401 |
gtacattccttttggttctggaagaa |
426 |
Q |
| |
|
||||||||| |||||| ||||||||| |
|
|
| T |
22971974 |
gtacattccatttggtgctggaagaa |
22971949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 240 - 416
Target Start/End: Complemental strand, 22946588 - 22946412
Alignment:
| Q |
240 |
caagcatgtgagattgatggttttcatataccaatcaaaagcaaggtaataatcaatgcgtgggcgattggaagagatccaaagtattggactgacccag |
339 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||| || | ||| ||||||||||| ||||| |||||||| |||||||| ||||||||||| |||| |
|
|
| T |
22946588 |
caagcatgtgagattgatggttatcacataccaatcaatagtagggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccag |
22946489 |
T |
|
| Q |
340 |
agaggttttatccagagagattcattggtagctctattgactataaagggaataattttgagtacattccttttggt |
416 |
Q |
| |
|
| | ||||||||| || ||||| |||| ||| ||| |||| | ||||| | ||||||||||||||||| |||||| |
|
|
| T |
22946488 |
ataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaacaaattttgagtacattccatttggt |
22946412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 38 - 439
Target Start/End: Complemental strand, 23033085 - 23032699
Alignment:
| Q |
38 |
caccatagtttgggcaatggcagagttggtaagggatgaaagagtgatgaagaaagcacaagatgaggtaagagaaatattcaacacaaaaggaattgtt |
137 |
Q |
| |
|
|||||||| |||||| ||| |||| || |||| ||| || || | |||||||||||||||| |||||| ||||| | ||||| | ||||||| ||| |
|
|
| T |
23033085 |
caccatagattgggcgatgacagaaatgataagagatcaacgaataatgaagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaaaggtt |
23032986 |
T |
|
| Q |
138 |
ggtgagaactatattaatgagctcacttatttgaagtcagttgtgaaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgtg |
237 |
Q |
| |
|
| ||| || || || || |||| ||||||||| ||||| || ||||| ||| | ||||| |||||| ||| |||||||| || ||||||||||| | |
|
|
| T |
23032985 |
gatgaaaattacatccccgatctcaattatttgaaatcagtcgtcaaagaaacccttaggttccaccctacagtacctcttttgctaccaagagaatgcg |
23032886 |
T |
|
| Q |
238 |
agcaagcatgtgagattgatggttttcatataccaatcaaaagcaaggtaataatcaatgcgtgggcgattggaagagatccaaagtattggactgaccc |
337 |
Q |
| |
|
|||||||||||||| |||||| ||| |||||||| ||||| ||||| ||| ||||||| ||||| |||| |||||||||||| || ||||||| |
|
|
| T |
23032885 |
gtcaagcatgtgagataaatggttatcacataccaattaaaagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactactggactg---- |
23032790 |
T |
|
| Q |
338 |
agagaggttttatccagagagattcattggtagctctattgactataaagggaataattttgagtacattccttttggttctggaagaataatataccca |
437 |
Q |
| |
|
| |||||||||||||| | ||| |||||||||||||||| | |||||||||||||||||| |||||| | ||||||| ||||| |||| |
|
|
| T |
23032789 |
-----------aaccagagagattcatcgacagcgctattgactataaaggaagtaattttgagtacattccctttggtgccggaagaagaatatgccca |
23032701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 177 - 426
Target Start/End: Complemental strand, 22832082 - 22831833
Alignment:
| Q |
177 |
gttgtgaaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgtgagcaagcatgtgagattgatggttttcatataccaatca |
276 |
Q |
| |
|
|||||||||||||| || || ||||||||||| | | |||| |||||||||||||||| ||||||||||||| |||| | | ||||||| | | |
|
|
| T |
22832082 |
gttgtgaaagagacattgagattacaccctccgtcaacatttttgcttccaagagaatgtggaaaagcatgtgagataaatgggtatgatatacctttta |
22831983 |
T |
|
| Q |
277 |
aaagcaaggtaataatcaatgcgtgggcgattggaagagatccaaagtattggactgacccagagaggttttatccagagagattcattggtagctctat |
376 |
Q |
| |
|
||||||| || ||| | ||||| ||||| ||||||||||||||||| ||||| |||||||| || |||||||| || |||||||||| ||| | | | |
|
|
| T |
22831982 |
aaagcaaagtgatagtgaatgcttgggctattggaagagatccaaatcattgggacgacccagaaagattttatcctgaaagattcattgatagttgtgt |
22831883 |
T |
|
| Q |
377 |
tgactataaagggaataattttgagtacattccttttggttctggaagaa |
426 |
Q |
| |
|
|||||||| || ||||||||||||| ||||||||||||| |||| |||| |
|
|
| T |
22831882 |
ggactataagggtaataattttgagttcattccttttggtgctggtagaa |
22831833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 426
Target Start/End: Original strand, 22941327 - 22941576
Alignment:
| Q |
177 |
gttgtgaaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgtgagcaagcatgtgagattgatggttttcatataccaatca |
276 |
Q |
| |
|
|||||||||||||| || || || |||||||| ||| | |||| |||||||||||||||| ||||||||||| || |||| | | ||||||| | | |
|
|
| T |
22941327 |
gttgtgaaagagacattgagattgcaccctcctgctgcatttttgcttccaagagaatgtggacaagcatgtgaaataaatgggtatgatatacctttta |
22941426 |
T |
|
| Q |
277 |
aaagcaaggtaataatcaatgcgtgggcgattggaagagatccaaagtattggactgacccagagaggttttatccagagagattcattggtagctctat |
376 |
Q |
| |
|
||||||| || ||| | ||||| ||||| ||||||||||||||||| ||||| |||||||||||| |||||||| || || || |||| || | | | |
|
|
| T |
22941427 |
aaagcaaagtgatagtgaatgcttgggccattggaagagatccaaatcattgggatgacccagagagattttatcctgaaaggtttattgaaagttgtgt |
22941526 |
T |
|
| Q |
377 |
tgactataaagggaataattttgagtacattccttttggttctggaagaa |
426 |
Q |
| |
|
|| ||||| || ||||||||||||| |||||| |||||| ||||||||| |
|
|
| T |
22941527 |
agattataagggaaataattttgagttcattccatttggtgctggaagaa |
22941576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 424
Target Start/End: Complemental strand, 22986407 - 22986277
Alignment:
| Q |
294 |
aatgcgtgggcgattggaagagatccaaagtattggactgacccagagaggttttatccagagagattcattggtagctctattgactataaagggaata |
393 |
Q |
| |
|
||||| ||||| |||||| | ||||| || ||||||| |||||| || | ||||||||| ||||| || |||| ||| |||||||| | ||||| | || |
|
|
| T |
22986407 |
aatgcttgggccattggacgggatcctaaatattggaatgaccccgataagttttatcctgagaggtttattgatagttctattgatttcaaaggaacta |
22986308 |
T |
|
| Q |
394 |
attttgagtacattccttttggttctggaag |
424 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| |
|
|
| T |
22986307 |
attttgagtacattccatttggtgctggaag |
22986277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 159 - 439
Target Start/End: Original strand, 6489 - 6769
Alignment:
| Q |
159 |
ctcacttatttgaagtcagttgtgaaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgtgagcaagcatgtgagattgatg |
258 |
Q |
| |
|
|||| ||||||||| ||||| || ||||| ||| | ||||||||||||||||| |||||||| || ||||||||||||| ||||||||||||| ||| |
|
|
| T |
6489 |
ctcaattatttgaaatcagtcgtcaaagaaacccttaggttacaccctccagcacctcttttgctaccaagagaatgtggtaaagcatgtgagataaatg |
6588 |
T |
|
| Q |
259 |
gttttcatataccaatcaaaagcaaggtaataatcaatgcgtgggcgattggaagagatccaaagtattggactgacccagagaggttttatccagagag |
358 |
Q |
| |
|
||| | | ||||| | | || ||||| ||||||||||| ||||| |||| |||||||||||| | |||||||| ||||||||||||||||||||||| |
|
|
| T |
6589 |
gttataacataccgtttaggagtaaggtgataatcaatgcttgggcaattgcaagagatccaaacttctggactgaaccagagaggttttatccagagag |
6688 |
T |
|
| Q |
359 |
attcattggtagctctattgactataaagggaataattttgagtacattccttttggttctggaagaataatatacccagg |
439 |
Q |
| |
|
||||| || ||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| | |||||| |
|
|
| T |
6689 |
attcactgacagcactattgactataaagggggtaattttgagtacattccttttggtgctggaagaagaatttgcccagg |
6769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 177 - 426
Target Start/End: Original strand, 5593983 - 5594232
Alignment:
| Q |
177 |
gttgtgaaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgtgagcaagcatgtgagattgatggttttcatataccaatca |
276 |
Q |
| |
|
|||||||||||||| || || ||||||||||| | | |||| |||||||||||||||| ||||||||||||| |||| | | ||||||| | | |
|
|
| T |
5593983 |
gttgtgaaagagacattgagattacaccctccgtcaacatttttgcttccaagagaatgtggaaaagcatgtgagataaatgggtatgatatacctttta |
5594082 |
T |
|
| Q |
277 |
aaagcaaggtaataatcaatgcgtgggcgattggaagagatccaaagtattggactgacccagagaggttttatccagagagattcattggtagctctat |
376 |
Q |
| |
|
||||||| || ||| | ||||| ||||| ||||||||||||||||| ||||| |||||||| || |||||||| || |||||||||| ||| | | | |
|
|
| T |
5594083 |
aaagcaaagtgatagtgaatgcttgggctattggaagagatccaaatcattgggacgacccagaaagattttatcctgaaagattcattgatagttgtgt |
5594182 |
T |
|
| Q |
377 |
tgactataaagggaataattttgagtacattccttttggttctggaagaa |
426 |
Q |
| |
|
|||||||| || ||||||||||||| ||||||||||||| |||| |||| |
|
|
| T |
5594183 |
ggactataagggtaataattttgagttcattccttttggtgctggtagaa |
5594232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 421
Target Start/End: Complemental strand, 23610352 - 23610220
Alignment:
| Q |
289 |
taatcaatgcgtgggcgattggaagagatccaaagtattggactgacccagagaggttttatccagagagattcattggtagctctattgactataaagg |
388 |
Q |
| |
|
|||| ||||| ||||| || ||||| ||||| || ||||||| ||||||||| | ||||||||| || || || |||| |||||||||||| | ||| |
|
|
| T |
23610352 |
taataaatgcttgggcaataggaagggatcctaaatattggaatgacccagataagttttatcctgaaaggtttattgatagctctattgatttctcagg |
23610253 |
T |
|
| Q |
389 |
gaataattttgagtacattccttttggttctgg |
421 |
Q |
| |
|
| ||||||||||| |||||| |||||| |||| |
|
|
| T |
23610252 |
aactaattttgagttcattccatttggtgctgg |
23610220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 41305310 - 41305347
Alignment:
| Q |
292 |
tcaatgcgtgggcgattggaagagatccaaagtattgg |
329 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41305310 |
tcaatgcttgggcgattggaagagatccaaagtattgg |
41305347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 41465811 - 41465847
Alignment:
| Q |
294 |
aatgcgtgggcgattggaagagatccaaagtattgga |
330 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41465811 |
aatgcatgggcgattggaagagatccaaagtattgga |
41465847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 426
Target Start/End: Original strand, 7154493 - 7154535
Alignment:
| Q |
384 |
aaagggaataattttgagtacattccttttggttctggaagaa |
426 |
Q |
| |
|
||||| |||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
7154493 |
aaaggaaataattttgagtatattccttttggtgctggaagaa |
7154535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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