View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_41 (Length: 413)
Name: NF7721_low_41
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 205 - 396
Target Start/End: Original strand, 2528270 - 2528461
Alignment:
| Q |
205 |
aagatgaagacgaaggatttgacaaaatttattatatgggaggtgaaagaattaccaccgaacagcctcaaacatgaattacgtaaatcgcaagccttgt |
304 |
Q |
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| T |
2528270 |
aagatgaagacgaaggatttgacaaaatttattatatgggaggtgaaagaattaccaccgaacagcctcaaacatgaattacgtaaatcgcaagccttgt |
2528369 |
T |
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| Q |
305 |
tgttgggggtaatgaagtatgcgagatctccttttataaggagaattcacaactgatttagagaaaagaactcaagtaacaaaacagattgg |
396 |
Q |
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| T |
2528370 |
tgttgggggtaatgaagtatgcgagatctccttttataaggagaattcacaactgatttagagaaaagaactcaagtaacaaaacagattgg |
2528461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 2528047 - 2528227
Alignment:
| Q |
17 |
agttgatgttaacttcaactctggattcttgattcgtaagatggatgcagaaattaataaaattgcacaacaaaaaacaaatgctgcgaaaacgtacacg |
116 |
Q |
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| T |
2528047 |
agttgatgttaacttcaactctggtttcttgattcgtaagatggatgcagaaattaataaaattgcacaacaaaaaacaaatgctgcgaaaacgtacacg |
2528146 |
T |
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| Q |
117 |
aaacatttgttgctacttggttccttgcgtacgggctgatacatgatgcggtgattgtaaaacaagaaacgacgatgcagt |
197 |
Q |
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| T |
2528147 |
aaacatttgttgctacttggttccttgcgtacgggctgatacatgatgcggtgattgtaaaacaagaaacgacgatgcagt |
2528227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 27461476 - 27461437
Alignment:
| Q |
322 |
tatgcgagatctccttttataaggagaattcacaactgat |
361 |
Q |
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| T |
27461476 |
tatgcgagctctccttttatatggagaattcacaactgat |
27461437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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