View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_42 (Length: 410)
Name: NF7721_low_42
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 156 - 396
Target Start/End: Complemental strand, 34836106 - 34835866
Alignment:
| Q |
156 |
gaatctaaaaatacagagattgatatgcaaatggttttaaatattttgattcaatgtattgattgcgtcgcaatccgaatacatatattttgattgctca |
255 |
Q |
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| T |
34836106 |
gaatctaaaaatacggagattgatatgcaaatggttttaaatattttgattcaatgtattgattgcgtcccaatccgaatacatatatattgattgttca |
34836007 |
T |
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| Q |
256 |
tgttaataattggtttcagattcttattggtccttctgattgggaagactactccaaaggaaatgaaggatctacaagatatagaatccataacctacca |
355 |
Q |
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| T |
34836006 |
tgttaataattggtttcagattcttattggtccttctgattgggaagactactccaaaggaaaggaaggatctacaagatatagaatccataacctacca |
34835907 |
T |
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| Q |
356 |
aaaaattctggacctggagtctatgagctcggagtagctgc |
396 |
Q |
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| T |
34835906 |
gaaaattctggacctggagtctatgagctcggagtagctgc |
34835866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 34836242 - 34836140
Alignment:
| Q |
20 |
tgttatgtgtgtaagattgaaaaatatcaaactaaagggctacgtaatagccgacaatttcacatattcacgctgtcaagacattgttggattgagatct |
119 |
Q |
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| T |
34836242 |
tgttatgtgtgtaagattgaaaaatatcaaactaaagggctacgtaatagctgacaatttcacatattcatgctgtcaagacattgttggattgagatct |
34836143 |
T |
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| Q |
120 |
gaa |
122 |
Q |
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| T |
34836142 |
gaa |
34836140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 336
Target Start/End: Original strand, 35335137 - 35335229
Alignment:
| Q |
244 |
tttgattgctcatgttaataattggtttcagattcttattggtccttctgattgggaagactactccaaaggaaatgaaggatctacaagata |
336 |
Q |
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| T |
35335137 |
tttggttgctcatgttataaactgttttcagattcttattggtccttctgattgggaagactattccaaagaaaaggaaggatctaccagata |
35335229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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