View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_43 (Length: 407)
Name: NF7721_low_43
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_43 |
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| [»] scaffold0025 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 129 - 389
Target Start/End: Original strand, 50494417 - 50494676
Alignment:
| Q |
129 |
actatatttgtgaaacatgttgaaggaaagattttgattgtcgatctgtgtgtggacgatttgatatataaagcaaattgtgaagaattatttgaagatt |
228 |
Q |
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| T |
50494417 |
actatatttgtgaaacacgttgaag-aaagatttcaattgtcggtctgtgtgtggacgatttgatatataaagcaaattgtgaagaattgtttgaagatt |
50494515 |
T |
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| Q |
229 |
ttgagtgctccatgaagaagaactttgctatgacagattttgggaaaatgaaatactttcttgaagttgaagtaactcgtaatggaaaaggaattttcat |
328 |
Q |
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| T |
50494516 |
ttgagtgctccatgaagaagaactttgctatgacagattttgggaaaatgagatactttcttgaagttgaagtaactcgtaatggaaaaggaattttcat |
50494615 |
T |
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| Q |
329 |
tcatcagcacaagtattctagagaaattttgtctaggtttggaatggaataatgcaacttg |
389 |
Q |
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| T |
50494616 |
tcatcagcacaagtattctagagaaattttgtctaggtttggaatggaataatgcaacttg |
50494676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 50493590 - 50493676
Alignment:
| Q |
49 |
aacaaacatcaagagcatggtatagtaagatttaagtttatttctgtcaagaaaactttgaaaaatgtcatcatgagcatactatat |
135 |
Q |
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| T |
50493590 |
aacaaacaccaagagcatggtatagtaagatttaagtttatttctgtcaagagaactttgaaaaatgtcatcatgagcatactatat |
50493676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 385
Target Start/End: Original strand, 42971054 - 42971319
Alignment:
| Q |
120 |
catgagcatactatatttgtgaaacatgttgaaggaaagattttgattgtcgatctgtgtgtggacgatttgatatataaagcaaattgtgaagaattat |
219 |
Q |
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| T |
42971054 |
catgagcatactttgtttgtgaaacatgctgaaggaaagtgtttgattgtgagtctgtatgtagatgatctgatatatacaggatattatgaagagttat |
42971153 |
T |
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| Q |
220 |
ttgaagattttgagtgctccatgaagaagaactttgctatgacagattttgggaaaatgaaatactttcttgaagttgaagtaactcgtaatggaaaagg |
319 |
Q |
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| T |
42971154 |
ttgaaggttttatagactctatgaagaaacattttgacatgactgatttggggaagatgaggtaccttcttggattagaagtaactcaagatgccaatgg |
42971253 |
T |
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| Q |
320 |
aattttcattcatcagcacaagtattctagagaaattttgtctaggtttggaatggaataatgcaa |
385 |
Q |
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| T |
42971254 |
aatttttattcatcagcagaaatatgcaagagaaatcttgtccatatttggtatggaagaatgcaa |
42971319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 10781991 - 10781721
Alignment:
| Q |
18 |
tacaagctgagaaaagctttatatgacttgaaacaaacatcaagagcatggtatagtaagatttaagtttatttctgtcaagaaaactttgaaaaatgtc |
117 |
Q |
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| T |
10781991 |
tacaagttgaaaaaagctttatatggtttaaagcaagctccaagagcttggtatagtaaaattgaagcttacttctgtcaacaaaagtttgaaaagtgtc |
10781892 |
T |
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| Q |
118 |
atcatgagcatactatatttgtgaaacatgttgaaggaaagattttgattgtcgatctgtgtgtggacgatttgatatataaagcaaattgtgaagaatt |
217 |
Q |
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| T |
10781891 |
cacatgagcatacactatttgtgaagcatactgaagggaaaatattgattgtcagtctatatgtagatgacttgatcttcactggaaattgtgaagagtt |
10781792 |
T |
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| Q |
218 |
atttgaagattttgagtgctccatgaagaagaactttgctatgacagattttgggaaaatgaaatactttc |
288 |
Q |
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| T |
10781791 |
ctttgaagatttcaaatgctccatgaagaagaattttgctatgtcagacttggggaagatgaggtactttc |
10781721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 291
Target Start/End: Complemental strand, 46431662 - 46431407
Alignment:
| Q |
36 |
ttatatgacttgaaacaaacatcaagagcatggtatagtaagatttaagtttatttctgtcaagaaaactttgaaaaatgtcatcatgagcatactatat |
135 |
Q |
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| T |
46431662 |
ttatatggattgaaacaggcaccaagagcatggtatagtaaaatagaagcttacttctgcaaagagaattttgagaaatgccctcattaacatactttat |
46431563 |
T |
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| Q |
136 |
ttgtgaaacatgttgaaggaaagattttgattgtcgatctgtgtgtggacgatttgatatataaagcaaattgtgaagaattatttgaagattttgagtg |
235 |
Q |
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| T |
46431562 |
ttgtaaagcatgctgaaaacaagatcttaattgttagtttgtatgtggatgatctgatatatactggaaattgtgaagtattaattgatgacttcaagtg |
46431463 |
T |
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| Q |
236 |
ctccatgaagaagaactttgctatgacagattttgggaaaatgaaatactttcttg |
291 |
Q |
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| T |
46431462 |
ttctatgaagaaaaactttgtcatgactgatttgggaaaaatgagatactttcttg |
46431407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 59326 - 59240
Alignment:
| Q |
66 |
tggtatagtaagatttaagtttatttctgtcaagaaaactttgaaaaatgtcatcatgagcatactatatttgtgaaacatgttgaa |
152 |
Q |
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| T |
59326 |
tggtatagaaagattgaagcctacttctatcaagaaaactttgataaatgtcctcatgagcatactctatttgtaaaacatattgaa |
59240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 59176 - 59127
Alignment:
| Q |
216 |
ttatttgaagattttgagtgctccatgaagaagaactttgctatgacaga |
265 |
Q |
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| T |
59176 |
ttatttgaagagtttaaatgctctatgaagaagaattttgctatgacaga |
59127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 40610586 - 40610527
Alignment:
| Q |
244 |
agaagaactttgctatgacagattttgggaaaatgaaatactttcttgaagttgaagtaa |
303 |
Q |
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| T |
40610586 |
agaagaattttgctatgacagatttgggaaaaatgagatactttcttgaagtagaagtaa |
40610527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 152
Target Start/End: Complemental strand, 7849894 - 7849802
Alignment:
| Q |
60 |
agagcatggtatagtaagatttaagtttatttctgtcaagaaaactttgaaaaatgtcatcatgagcatactatatttgtgaaacatgttgaa |
152 |
Q |
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| T |
7849894 |
agagcctggtatagtaaaatagaagcttatttctgcaaagaaaattttgaaaaatgccctcatgaacatactctgtttgtaaagcatgttgaa |
7849802 |
T |
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