View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_44 (Length: 407)
Name: NF7721_low_44
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 25664392 - 25664793
Alignment:
| Q |
1 |
tatcagatacaaagagttgaaaatatgtataaaataatcaagtttgtttatgctatgattatcttaaattctttatttctttttgcaatgaacgttgcgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25664392 |
tatcagatacaaagagttgaaaatatgtataaaataatcaagtttgtttatgctatgattatcttaaattctttatttctttttgcaatgaacgttgcgg |
25664491 |
T |
|
| Q |
101 |
gtaagctattttttcatacttttcaagattccttcttactttattgtttgtatgcaatagttatattgttatattaacaatannnnnnnnnatatctttt |
200 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25664492 |
gtaagttattttttcatacttttcaagtttccttcttactttattgtttgtatgcaatagttatattgttatattaacaata-ttttttttatatctttt |
25664590 |
T |
|
| Q |
201 |
ctcactttagagtatattacatgtgaaactgatgctgattgtccaaaaagtcccttaacagggtttgggtggaagtgcattaaacgacgatgtgtatatt |
300 |
Q |
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| T |
25664591 |
ctcacattagagtatattacatgtgaaactgatgctgattgtccaaaaagtcccttaacagggtttgggtggaagtgcattaaacgacgatgtgtatatt |
25664690 |
T |
|
| Q |
301 |
ttgatatagaaccatataagtaccaaacctaatag---------agactttgtagggaagaatgagttgctacactagcacaaaatctatgcaatatacc |
391 |
Q |
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| T |
25664691 |
ttgatatagaaccatataagtaccaaacctaatagattatacttagactttgcagggaagaatgagttgctacactagcacaaaatctatgcaatatacc |
25664790 |
T |
|
| Q |
392 |
tta |
394 |
Q |
| |
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||| |
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|
| T |
25664791 |
tta |
25664793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 26315607 - 26315689
Alignment:
| Q |
41 |
agtttgtttatgctatgattatcttaaattct-ttatttctttttgcaatgaacgttgcgggtaagctattttttcatactttt |
123 |
Q |
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||||||| |||||||||||||| || | |||| ||||||||| ||| || |||||||| |||||||||||||||||||||||| |
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| T |
26315607 |
agtttgtgtatgctatgattatattta-ttctcttatttcttgttgaaaagaacgttgttggtaagctattttttcatactttt |
26315689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 26309636 - 26309722
Alignment:
| Q |
41 |
agtttgtttatgctatgattatcttaaattct-ttatttctttttgcaatgaacgttgcgggtaagctattttttcatacttttcaag |
127 |
Q |
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| T |
26309636 |
agtttgtgtatgctatgattatattca-ttctcttatttcttgttgaaaataactttgctggtaggctattttttcatacttttcaag |
26309722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 179
Target Start/End: Original strand, 6962350 - 6962495
Alignment:
| Q |
38 |
tcaagtttgtttatgctatgattatcttaaattctttatttctttttgcaatgaacgttgcgggtaagctat--tttttcatacttttcaagattcctt- |
134 |
Q |
| |
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||||||||||||||| ||||||| | || | |||| ||||||||||||||| |||||| | ||| |||| | ||||||||| ||||||| || ||| |
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| T |
6962350 |
tcaagtttgtttatgttatgattttattcacttctctatttctttttgcaaagaacgtcgttggtgagcttttatttttcatatttttcaaattttctta |
6962449 |
T |
|
| Q |
135 |
cttactttattgtttgtatgcaata-gttatattgttatattaaca |
179 |
Q |
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||||||| |||||||||| ||||| |||| ||||| |||||||| |
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| T |
6962450 |
tttactttgttgtttgtatacaatattttatcttgttttattaaca |
6962495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 24108427 - 24108371
Alignment:
| Q |
40 |
aagtttgtttatgctatgattatcttaaattctttatttctttttgcaatgaacgtt |
96 |
Q |
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|||| ||||||||||||||| |||| | |||| |||||||| |||||||||||||| |
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| T |
24108427 |
aagtatgtttatgctatgatcctctttatttctctatttcttattgcaatgaacgtt |
24108371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 11860820 - 11860896
Alignment:
| Q |
38 |
tcaagtttgtttatgctatgattatcttaaattctttatttctttttgcaatgaacgttgcgggtaagctatttttt |
114 |
Q |
| |
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||||||||||||||| |||||||||||| ||| |||||||||| |||||||| ||| ||||||| ||||||| |
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| T |
11860820 |
tcaagtttgtttatgttatgattatctttgtttccccatttcttttttcaatgaaccttgacggtaagccatttttt |
11860896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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