View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_45 (Length: 402)
Name: NF7721_low_45
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 12 - 388
Target Start/End: Complemental strand, 28334201 - 28333825
Alignment:
| Q |
12 |
atcaccaaacaaggttgatgatgctgaaggatctgtgtgcatttatccaatgattttggttcaaattccaatggcaatgagaaagaagtatgacaccaaa |
111 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28334201 |
atcaccaaacaaggttgatgatgttgaaggatctgtgtgcatttatccaatgattttggttcaaattccaatggcaatgagaaagaagtatgacaccaaa |
28334102 |
T |
|
| Q |
112 |
cttctgtgttccatttttgcaaagaggtgatgcctaagctaccaacaagtttcagtgcaatagtgttaactaannnnnnnnnaagttgaa-atagatttt |
210 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
28334101 |
cttctgtgttccatttttgcaaagaggtgatgtctaagctaccaacaagtttcagtgcaatagtgttaactaatttttttt-aagttgaacatagatttt |
28334003 |
T |
|
| Q |
211 |
gcaaatgtcgcaaaatagcatagtgtgtgtcaagtttgatgcatgacacattatcctattaagattttaactcccttgagaattatttgcaacctcttaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28334002 |
gcaaatgtcgcaaaatagcatagtgtgtgtcaagtttgatgcatgacacattatcctattaagattttaactcccttgagaattatttgcaacctcttaa |
28333903 |
T |
|
| Q |
311 |
acaaagaaacacatgtactttctttctgttaaagtctgcattgacattgtactaatgtagattatagatatcattact |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28333902 |
acaaagaaacacatgtactttctttctgttaaagtctgcattgacattgtactaatgtagattatagatatcattact |
28333825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 387
Target Start/End: Complemental strand, 44786296 - 44785912
Alignment:
| Q |
13 |
tcaccaaacaaggttgatgatgctgaaggatctgtgtgcatttatccaatgattttggttcaaattccaatggcaatgagaaagaagtatgacaccaaac |
112 |
Q |
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| T |
44786296 |
tcaccaaacaaggttgatgatgttgaaggatctgtgtgcgtttatccaatgattttggttcaaattccaatggcaatgagaaagaagtatgacaccaaac |
44786197 |
T |
|
| Q |
113 |
ttctgtgttccatttttgcaaagaggtgatgcctaagctaccaacaa----------gtttcagtgcaatagtgttaactaannnnnnnnnaagttgaa- |
201 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| |||||||| |
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| T |
44786196 |
ttctgtgttccatttttgcaaagaggtgatgtctaagctacctacaacgggctacaagtttcagtgcaatagtgttaactaatttttttt-aagttgaac |
44786098 |
T |
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| Q |
202 |
atagattttgcaaatgtcgcaaaatagcatagtgtgtgtcaagtttgatgcatgacacattatcctattaagattttaactcccttgagaattatttgca |
301 |
Q |
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| T |
44786097 |
atagattttgcaaatgtcgcaaaatagcacagtgtgtgtcaagtttgatacatgacacattatcctattaagattttaactcccttaagaattatttgca |
44785998 |
T |
|
| Q |
302 |
acctcttaaacaaagaaacacatgtactttctttctgttaaagtctgcattgacattgtactaatgtagattatagatatcattac |
387 |
Q |
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| T |
44785997 |
acctcttaaacaaagaaacacatgtactttctttctgttaaagtctgcattaacattgtactactgtagattataaatatcattac |
44785912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 47961914 - 47961754
Alignment:
| Q |
21 |
caaggttgatgatgctgaaggatctgtgtgcatttatccaatgattttggttcaaattccaatg-gcaatgagaaagaagtatgacaccaaacttctgtg |
119 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| | |
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| T |
47961914 |
caaggttgatgatgttgaaggatctgtatgcatttatccaatggttttggttcaaattccaatgtgcaatgagaaagaggtatgtcaccaaacttctgcg |
47961815 |
T |
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| Q |
120 |
ttccatttttgcaaagaggtgatgcctaagctaccaacaagtttcagtgcaatagtgttaa |
180 |
Q |
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|| ||||||||| |||||||||| | ||||||||| |||||||| ||||||||||||||| |
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| T |
47961814 |
tttcatttttgctaagaggtgatttcgaagctaccagcaagtttccgtgcaatagtgttaa |
47961754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 28334316 - 28334222
Alignment:
| Q |
12 |
atcaccaaacaaggttgatgatgctgaaggatctgtgtgcatttatccaatgattttggttcaaattccaatggcaatgagaaagaagtatgaca |
106 |
Q |
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|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28334316 |
atcaccaaacaaggttgatgatgttgaaggatctgtgtgcatttatccaatgattttggttcaaattccaatggcaatgagaaagaagtatgaca |
28334222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 252 - 388
Target Start/End: Complemental strand, 47961705 - 47961569
Alignment:
| Q |
252 |
catgacacattatcctattaagattttaactcccttgagaattatttgcaacctcttaaacaaagaaacacatgtactttctttctgttaaagtctgcat |
351 |
Q |
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||||||||||||| || |||||||||||||||| ||||||||||| |||||||||||| || ||||||||| ||||||| | || |||| || || |
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| T |
47961705 |
catgacacattatacttttaagattttaactccattgagaattatctgcaacctcttagacttagaaacacaaatactttccctgtgcaaaagcttgaat |
47961606 |
T |
|
| Q |
352 |
tgacattgtactaatgtagattatagatatcattact |
388 |
Q |
| |
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| ||||||| | |||||||||||||||||||||||| |
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| T |
47961605 |
tagcattgtattgatgtagattatagatatcattact |
47961569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 44786380 - 44786288
Alignment:
| Q |
21 |
caaggttgatgatgctgaaggatctgtgtgcatttatccaatgattttggttcaaattccaatg-gcaatgagaaagaagtatgacaccaaac |
112 |
Q |
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|||||||||||||| | | |||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||| | ||||| |||||||| |
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| T |
44786380 |
caaggttgatgatgttaatggatctttgtgcatttatccaatgattttgagtgaaattccaatgtgcaatgagaaaaaggtatgtcaccaaac |
44786288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 28334399 - 28334307
Alignment:
| Q |
21 |
caaggttgatgatgctgaaggatctgtgtgcatttatccaatgattttggttcaaattccaatg-gcaatgagaaagaagtatgacaccaaac |
112 |
Q |
| |
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|||||||||||||| | | |||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||| | |||| |||||||| |
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| T |
28334399 |
caaggttgatgatgttaatggatctatgtgcatttatccaatgattttgagtaaaattccaatgtgcaatgagaaaaaggtatatcaccaaac |
28334307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 50404182 - 50404071
Alignment:
| Q |
21 |
caaggttgatgatgctgaaggatctgtgtgcatttatccaatgattttggttcaaattccaatg-gcaatgagaaagaagtatgacaccaaacttctgtg |
119 |
Q |
| |
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|||||||||||||| |||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||| |||||||| |
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| T |
50404182 |
caaggttgatgatgttgaaggatctttatgcatttatccaatggttttggttcaaattccaatgtgcaatgagaaagaggtatgacaccgaacttctgca |
50404083 |
T |
|
| Q |
120 |
ttccatttttgc |
131 |
Q |
| |
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|||||||||||| |
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| T |
50404082 |
ttccatttttgc |
50404071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 25434335 - 25434427
Alignment:
| Q |
85 |
gcaatgagaaagaagtatgacaccaaacttctgtgttccatttttgcaaagaggtgatgcctaagctaccaacaagtttcagtgcaatagtgt |
177 |
Q |
| |
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||||||||||||| ||||| ||| ||| ||||| ||| ||||||||| ||||| ||||| ||||||||||| |||||||| |||||| ||||| |
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| T |
25434335 |
gcaatgagaaagaggtatgtcactaaaattctgcgtttcatttttgctaagagatgatgtctaagctaccagcaagtttccgtgcaacagtgt |
25434427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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