View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_48 (Length: 396)
Name: NF7721_low_48
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 9683938 - 9683552
Alignment:
| Q |
1 |
tgtctatacattctcttatctaaaattactaagggtttcttttttatcnnnnnnntaaacattcatttgatattttataaataaattctacttcttcaaa |
100 |
Q |
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| T |
9683938 |
tgtctatacattctcttatctaaaattactaagagtttcttttttatcaaaaaaataaacattcatttgatattttataaataaattctacttcaaaaaa |
9683839 |
T |
|
| Q |
101 |
aaa-gtgcaacttataacatcattaa--gtttcaaatttggcactattaaactaagggaaatgcatgtcattgttcttaagccttacatgcaacctagga |
197 |
Q |
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||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9683838 |
aaaagtgcaacttataacatcattaaaagtttcaaatttggcacaattaaactaagggaaatgcatgtcattgttcttaagccttacatgcaacctagga |
9683739 |
T |
|
| Q |
198 |
tttcttgtnnnnnnngaaa------cataggattaatgatgttggaatgaatgtacccataaaaatgatgttgaatgtcaattgatttgaccaatagctg |
291 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9683738 |
tttcttgtaagaaaagaaaaagaaacataggattaatgatgttggaatgaatgtgcccaaaaaaatgatgttgaatgtcaattgatttgaccaatagctg |
9683639 |
T |
|
| Q |
292 |
tctaggctgtaactgttcttctcccttttctacgtaaataataggagtatataaaggaatgttgtatgctatatttaccttaaatta |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9683638 |
tctaggctgtaactgttcttctcccttttctacgtaaataataggagtatataaaggaatgttgtatgctatatttaccttaaatta |
9683552 |
T |
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