View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_49 (Length: 394)
Name: NF7721_low_49
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 12998372 - 12998741
Alignment:
| Q |
19 |
aaagagttaataggtttgtagggacagtgaaagataataactatatgatcttggattcaaaactctcnnnnnnnctaacattaatatttgtccatacaaa |
118 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12998372 |
aaagagttaataggtttgtagggacattgaaagataataactatatgatcttggattcaaaactctcaaaaaa-ctaacattaatatttgtccatacaaa |
12998470 |
T |
|
| Q |
119 |
aaagttgatagattcacacgtagnnnnnnnnnnn-------aatttgaataaatttacgtagnnnnnnn-atatagatttgtagtataagcatgcgaaaa |
210 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
12998471 |
aaagttgatagattcagacgtagtgttttttttttttttttaatttgaataaatttacgttgttttttttatatagatttgtagtataagcatgcgaaaa |
12998570 |
T |
|
| Q |
211 |
atatgagtatatataatcactcattcataaaaaccccacagttttagcatgtttcacatgacacaatattagaatgggtgacttgtgcgaagttttccga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12998571 |
atatgagtatatataatcactcattcataaaaaccccacagttttagcatgtttcacatgacacaatattagaatgggtgacttgtgcgaagttttccga |
12998670 |
T |
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| Q |
311 |
aaatcagtgcgcgtgaagacaaaaaactcatgttgctttgcaggatcagtcaacaatgcttaaagtcgtctc |
382 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12998671 |
aaatca-tgcgcgtgaagacaaaaaactcgtgttgctttgcaggatcagtcaacaatgcttaaagtcgtctc |
12998741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 22529147 - 22529098
Alignment:
| Q |
331 |
aaaaaactcatgttgctttgcaggatcagtcaacaatgcttaaagtcgtc |
380 |
Q |
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|||| |||||||||| |||| ||| |||||| |||||||||||||||||| |
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| T |
22529147 |
aaaagactcatgttggtttgtagggtcagtcgacaatgcttaaagtcgtc |
22529098 |
T |
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