View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7721_low_5 (Length: 643)

Name: NF7721_low_5
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7721_low_5
NF7721_low_5
[»] chr6 (8 HSPs)
chr6 (18-627)||(8419545-8420155)
chr6 (225-444)||(8817198-8817409)
chr6 (439-612)||(8428028-8428198)
chr6 (432-493)||(8419367-8419430)
chr6 (445-494)||(28705098-28705147)
chr6 (18-61)||(1231215-1231257)
chr6 (446-492)||(15357089-15357135)
chr6 (20-61)||(33027706-33027746)
[»] scaffold0576 (1 HSPs)
scaffold0576 (446-492)||(2078-2124)
[»] chr8 (4 HSPs)
chr8 (446-492)||(3731636-3731682)
chr8 (19-57)||(4560615-4560652)
chr8 (17-58)||(22505653-22505693)
chr8 (18-58)||(8060780-8060819)
[»] chr7 (3 HSPs)
chr7 (446-492)||(2754412-2754458)
chr7 (19-56)||(18765397-18765433)
chr7 (17-57)||(34464141-34464180)
[»] chr5 (2 HSPs)
chr5 (21-58)||(35299880-35299916)
chr5 (18-58)||(36796626-36796665)
[»] chr2 (2 HSPs)
chr2 (18-59)||(16551757-16551798)
chr2 (445-494)||(25815449-25815498)
[»] chr3 (1 HSPs)
chr3 (19-59)||(2081001-2081040)


Alignment Details
Target: chr6 (Bit Score: 567; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 18 - 627
Target Start/End: Complemental strand, 8420155 - 8419545
Alignment:
Q  18 tttatgtcaatagataagctcaaataaagtcaatccaaacatgcgttacatatcaaacatacaaactataacagaatacataaatatcatgttcaattgc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8420155 tttatgtcaatagataagctcaaataaagtcaatccaaacatgcgttacatatcaaacatacaaactataacagaatacataaatatcatgttcaattgc 8420056  T
Q  118 tataacagctttaacttacccaacaactactctcagatttggcaaatcattatcaaactctataaacgacaaaaacctaaccacatttcattactcaaat 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8420055 tataacagctttaacttacccaacaactactctcagatttagcaaatcattatcaaactctataaacgacaaaaacctaaccacatttcattactcaaat 8419956  T
Q  218 atacatgtatcataaaattcaaaaacaatttcatccaaaaagtacaattctcttctgaaaagctatatatagcactgacacttcattatcaaagacatct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8419955 atacatgtatcataaaattcaaaaacaatttcatccaaaaagtacaattctcttctgaaaagctatatatagcactgacacttcattatcaaagacatct 8419856  T
Q  318 agtttctgtgatatgtgtgagtgtttgacagaaacaagatatcaacacatatagttacattccgcattcattttcttaaattattacaagtgtaaacata 417  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8419855 agtttctgtgatgtgtgtgagtgtttgacagcaacaagatatcaacacatatagttacattctgcattcattttcttaaattattacaagtgtaaacata 8419756  T
Q  418 tcgcataaaactgaaaacaattaactccaaaatttcaattatctcaccaaaagctatatagcaccgacacacttcagactaaaggtgtttttagggcatg 517  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8419755 ttgcataaaactgaaaacaattaactccaaaatttcaattatctcaccaaaagctatatagcaccgacacacttcagactaaaggcgtttttagggcatg 8419656  T
Q  518 tctagggcctgacccgtgttagagttggtgttcgacaccaaaggatgtacagttaatttcaaaaagtt-caagtctctcaccaaaacctatatagccccc 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||||    
T  8419655 tctagggcctgacccgtgttagagttggtgttcgacaccaaaggatgtacagttaatttcaaaaggttaaaagtctctcaccaaaacctatgtagccccc 8419556  T
Q  617 acacacttcat 627  Q
    |||||||||||    
T  8419555 acacacttcat 8419545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 225 - 444
Target Start/End: Original strand, 8817198 - 8817409
Alignment:
Q  225 tatcataaaattcaaaaacaatttcatccaaaaagtacaattctcttctgaaaagctatatatagcactgacacttcattatcaaagacatctagtttct 324  Q
    ||||||||||||||| |||||||  || | |||||| |||||||||||  ||||| |||| |||||||||||||||||| |||||||||||||||||| |    
T  8817198 tatcataaaattcaacaacaattcaattccaaaagttcaattctcttccaaaaagttatacatagcactgacacttcat-atcaaagacatctagtttat 8817296  T
Q  325 gtgatatgtgtgagtgtttgacagaaacaagatatcaacacatatagttacattccgcattcattttcttaaattattacaagtgtaaacatatcgcata 424  Q
    ||||||| |||||||||||||||  |||||||||||||||||||||||||       |||||||||||||||||||||||||| ||| || ||| |||||    
T  8817297 gtgatatttgtgagtgtttgacaccaacaagatatcaacacatatagtta-------cattcattttcttaaattattacaagagtatacgtatagcata 8817389  T
Q  425 aaactgaaaacaattaactc 444  Q
    ||||| ||||||||||||||    
T  8817390 aaactcaaaacaattaactc 8817409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 439 - 612
Target Start/End: Complemental strand, 8428198 - 8428028
Alignment:
Q  439 taactccaaaattt-caattatctcaccaaaagctatatagcaccgacacacttcagactaaaggtgtttttagggcatgtctagggcctgacccgtgtt 537  Q
    |||||||||||||| |||||||||| ||||||| |||||| ||| ||||||||||||| |  ||        | ||||| |||||||||||| |||||||    
T  8428198 taactccaaaattttcaattatctcgccaaaagttatataacactgacacacttcagagttcagacca----aaggcatttctagggcctgatccgtgtt 8428103  T
Q  538 agagttggtgttcgacaccaaaggatgtacagttaatttcaaaaagttcaagtctctcaccaaaacctatatagc 612  Q
     ||||  |||||| ||||||||  ||||| |||||||||||||||||||||   | |||| ||||||||||||||    
T  8428102 tgagtcagtgttcaacaccaaaacatgtaaagttaatttcaaaaagttcaatcatatcacgaaaacctatatagc 8428028  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 432 - 493
Target Start/End: Complemental strand, 8419430 - 8419367
Alignment:
Q  432 aaacaattaactccaaaat--ttcaattatctcaccaaaagctatatagcaccgacacacttca 493  Q
    ||||||||||||||||||   |||||||||||||||||||||||| || |||| ||||||||||    
T  8419430 aaacaattaactccaaaaaagttcaattatctcaccaaaagctatgtaacaccaacacacttca 8419367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 445 - 494
Target Start/End: Original strand, 28705098 - 28705147
Alignment:
Q  445 caaaatttcaattatctcaccaaaagctatatagcaccgacacacttcag 494  Q
    ||||| ||||||||| | |||||||||||||||||||| |||||||||||    
T  28705098 caaaaattcaattatgtgaccaaaagctatatagcaccaacacacttcag 28705147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 1231257 - 1231215
Alignment:
Q  18 tttatgtcaatagataagctcaaataaagtcaatccaaacatgc 61  Q
    ||||||||||||||||| |||||||||| |||||||||||||||    
T  1231257 tttatgtcaatagataaactcaaataaa-tcaatccaaacatgc 1231215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 446 - 492
Target Start/End: Complemental strand, 15357135 - 15357089
Alignment:
Q  446 aaaatttcaattatctcaccaaaagctatatagcaccgacacacttc 492  Q
    |||| ||||||| ||||||||||| |||||||||||| |||||||||    
T  15357135 aaaaattcaattctctcaccaaaatctatatagcaccaacacacttc 15357089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 33027706 - 33027746
Alignment:
Q  20 tatgtcaatagataagctcaaataaagtcaatccaaacatgc 61  Q
    ||||||| |||||||||||||||||| |||||||||||||||    
T  33027706 tatgtcagtagataagctcaaataaa-tcaatccaaacatgc 33027746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 446 - 492
Target Start/End: Complemental strand, 2124 - 2078
Alignment:
Q  446 aaaatttcaattatctcaccaaaagctatatagcaccgacacacttc 492  Q
    |||| ||||||| ||||||||||| |||||||||||| |||||||||    
T  2124 aaaaattcaattctctcaccaaaatctatatagcaccaacacacttc 2078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 446 - 492
Target Start/End: Complemental strand, 3731682 - 3731636
Alignment:
Q  446 aaaatttcaattatctcaccaaaagctatatagcaccgacacacttc 492  Q
    |||| ||||||| ||||||||||| |||||||||||| |||||||||    
T  3731682 aaaaattcaattctctcaccaaaatctatatagcaccaacacacttc 3731636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 4560615 - 4560652
Alignment:
Q  19 ttatgtcaatagataagctcaaataaagtcaatccaaac 57  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  4560615 ttatgtcaatagataagctcaaat-aagtcaatccaaac 4560652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 22505653 - 22505693
Alignment:
Q  17 atttatgtcaatagataagctcaaataaagtcaatccaaaca 58  Q
    |||||||||||||||||||||||||| ||||||||| |||||    
T  22505653 atttatgtcaatagataagctcaaat-aagtcaatctaaaca 22505693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 8060780 - 8060819
Alignment:
Q  18 tttatgtcaatagataagctcaaataaagtcaatccaaaca 58  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  8060780 tttatgtcaatagatatgctcaaat-aagtcaatccaaaca 8060819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 446 - 492
Target Start/End: Original strand, 2754412 - 2754458
Alignment:
Q  446 aaaatttcaattatctcaccaaaagctatatagcaccgacacacttc 492  Q
    |||| ||||||| ||||||||||| |||||||||||| |||||||||    
T  2754412 aaaaattcaattctctcaccaaaatctatatagcaccaacacacttc 2754458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 18765397 - 18765433
Alignment:
Q  19 ttatgtcaatagataagctcaaataaagtcaatccaaa 56  Q
    |||||||||||||||||||||||||||| |||||||||    
T  18765397 ttatgtcaatagataagctcaaataaag-caatccaaa 18765433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 34464180 - 34464141
Alignment:
Q  17 atttatgtcaatagataagctcaaataaagtcaatccaaac 57  Q
    |||||||||||||||||| |||||||||| |||||||||||    
T  34464180 atttatgtcaatagataaactcaaataaa-tcaatccaaac 34464141  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 35299880 - 35299916
Alignment:
Q  21 atgtcaatagataagctcaaataaagtcaatccaaaca 58  Q
    |||||||||||||||||||||| |||||||||||||||    
T  35299880 atgtcaatagataagctcaaat-aagtcaatccaaaca 35299916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 36796665 - 36796626
Alignment:
Q  18 tttatgtcaatagataagctcaaataaagtcaatccaaaca 58  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  36796665 tttatgtcattagataagctcaaat-aagtcaatccaaaca 36796626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 16551798 - 16551757
Alignment:
Q  18 tttatgtcaatagataagctcaaataaagtcaatccaaacat 59  Q
    |||||||||||||||||||| |||  ||||||||||||||||    
T  16551798 tttatgtcaatagataagcttaaaacaagtcaatccaaacat 16551757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 494
Target Start/End: Complemental strand, 25815498 - 25815449
Alignment:
Q  445 caaaatttcaattatctcaccaaaagctatatagcaccgacacacttcag 494  Q
    ||||| ||||||| ||| | |||||||||||||||||| |||||||||||    
T  25815498 caaaaattcaattctctgaacaaaagctatatagcaccaacacacttcag 25815449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 2081040 - 2081001
Alignment:
Q  19 ttatgtcaatagataagctcaaataaagtcaatccaaacat 59  Q
    ||||||||||||||||| |||||| ||||||||||||||||    
T  2081040 ttatgtcaatagataagttcaaat-aagtcaatccaaacat 2081001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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