View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7721_low_50 (Length: 394)
Name: NF7721_low_50
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_50 |
 | |
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| [»] scaffold0012 (2 HSPs) |
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| [»] scaffold0061 (2 HSPs) |
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| [»] scaffold0017 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 32250580 - 32250216
Alignment:
| Q |
19 |
aaccatcactcatggaagaaaaatccaactcaagtggtggctgtgttatatcacatgctcctggagcaggaaaaacctttctcatcatttcttttcttgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250580 |
aaccatcactcatggaagaaaaatccaactcaagtggtggctgtgttatatcacatgctcctggagcaggaaaaacctttctcatcatttcttttcttgt |
32250481 |
T |
|
| Q |
119 |
aagttacttgaaattatttccagggaaacgacctctagtcctagctccaaaaaccacactctacacgtggcgaaaagagttcaaaaaatggaagattcct |
218 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
32250480 |
aagttacttgaagttatttccagggaaacgacctctagtcctagctccaaaaaccacactctacacgtggcgaaaagagttcaaaaaatggaagatttct |
32250381 |
T |
|
| Q |
219 |
gtgccggtttatcttatccatggccgtcgaacctctccaggttcaagttcgacgacaccaaaatcaatgattcttcctggatttccaagaccttctagtg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250380 |
gtgccggtttatcttatccatggccgtcgaacctctccaggttcaagttcgacgacaccaaaatcaatgattcttcctggatttccaagaccttctagtg |
32250281 |
T |
|
| Q |
319 |
atgtcaaacatgttttggattgtctcagcaagatacaaaagtggcactcacaccctagtgttctt |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32250280 |
atgtcaaacatgttttggattgtctcagcaagatacaaaagtggcactcacaccctagtgttctt |
32250216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 308 - 383
Target Start/End: Original strand, 32184382 - 32184458
Alignment:
| Q |
308 |
accttctagtgatgtcaaacatgttttggatt-gtctcagcaagatacaaaagtggcactcacaccctagtgttctt |
383 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||| |||| ||||||| |||||||||||||||||| ||| ||||||| |
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|
| T |
32184382 |
accttcaagtgatgtgaaacatgttttcgatttgtcttcgcaagatccaaaagtggcactcacactctactgttctt |
32184458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 7411712 - 7411644
Alignment:
| Q |
62 |
tgttatatcacatgctcctggagcaggaaaaacctttctcatcatttcttttcttgtaagttacttgaa |
130 |
Q |
| |
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|||| ||||||||||| |||| | |||||| ||||| | |||||||||||||| |||||||||||||| |
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|
| T |
7411712 |
tgttttatcacatgcttctggtgagggaaaaccctttataatcatttcttttctagtaagttacttgaa |
7411644 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 8845108 - 8844750
Alignment:
| Q |
19 |
aaccatcactcatggaagaaaaatccaactcaagtggtggctgtgttatatcacatgctcctggagcaggaaaaacctttctcatcatttcttttcttgt |
118 |
Q |
| |
|
||||||| |||||| |||||| |||| | ||| |||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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|
| T |
8845108 |
aaccatccctcatgcaagaaagatccgaaacaaatggtggatgtgtcatatcacatgctcctggagctggaaaaacctttctcgtcatttcttttcttgt |
8845009 |
T |
|
| Q |
119 |
aagttacttgaaattatttccagggaaacgacctctagtcctagctccaaaaaccacactctacacgtggcgaaaagagttcaaaaaatggaagattcct |
218 |
Q |
| |
|
|||||||||||| | |||||||||||| |||| ||||||| || |||||| ||||||||||||| ||| | ||||||||||||||||||||| ||||| |
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|
| T |
8845008 |
aagttacttgaagctctttccagggaaaagaccattagtccttgcaccaaaatccacactctacacatggtgcaaagagttcaaaaaatggaaggttcct |
8844909 |
T |
|
| Q |
219 |
gtgccggtttatcttatccatggccgtcgaacctctccaggttcaagttcgacgacaccaaaatcaatgattcttcctggatttccaagaccttctagtg |
318 |
Q |
| |
|
||||| || ||||||||||| ||||||| |||| || |||| ||| | |||||| | | | ||||||| ||| |||||||||||||| ||| |
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|
| T |
8844908 |
gtgcccgtgtatcttatccaaggccgtcaaacccagagagattca------acggctccaaaacctacggttcttcccggagttccaagaccttctggtg |
8844815 |
T |
|
| Q |
319 |
atgtcaaacatgttttggattgtctcagcaagatacaaaagtggcactcacaccctagtgttctt |
383 |
Q |
| |
|
|||| |||||||||||||||||||| | || ||| |||||||||| |||||||| ||||||||| |
|
|
| T |
8844814 |
atgtaaaacatgttttggattgtcttggaaaaataaaaaagtggcattcacacccaagtgttctt |
8844750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 8822761 - 8822976
Alignment:
| Q |
19 |
aaccatcactcatggaagaaaaatccaactcaagtggtggctgtgttatatcacatgctcctggagcaggaaaaacctttctcatcatttcttttcttgt |
118 |
Q |
| |
|
||||||| |||||| |||||| |||||| |||||||||| ||||| |||||||||| ||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
8822761 |
aaccatccctcatgcaagaaagatccaaaacaagtggtggatgtgtcatatcacatgttcctgga------aaaacctttctcatcatttcttttcgtgt |
8822854 |
T |
|
| Q |
119 |
aagttacttgaaattatttccagggaaacgacctctagtcctagctccaaaaaccacactctacacgtggcgaaaagagtt-caaaaaatggaagattcc |
217 |
Q |
| |
|
||| |||||||| ||||||| ||||||| |||| || |||| | |||||| | ||||| ||||| |||| |||||||| |||||||||||| ||| |
|
|
| T |
8822855 |
aaggtacttgaagttatttctagggaaaagaccattaatccttacaccaaaatctacactatacacatggcacaaagagttaaaaaaaatggaaggttca |
8822954 |
T |
|
| Q |
218 |
tgtgccggtttatcttatccat |
239 |
Q |
| |
|
|||||| || ||||||||||| |
|
|
| T |
8822955 |
tgtgcctgtggatcttatccat |
8822976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 49 - 238
Target Start/End: Complemental strand, 8809186 - 8808998
Alignment:
| Q |
49 |
caagtggtggctgtgttatatcacatgctcctggagcaggaaaaacctttctcatcatttcttttcttgtaagttacttgaaattatttccagggaaacg |
148 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||| | |||| |||||| ||||||||| ||||||||||||||||| ||||||||| ||||||| | ||||| | |
|
|
| T |
8809186 |
caagtgttggatgtgtcatatcacatgctcttagagctggaaaa-cctttctcaacatttcttttcttgtaaattacttgaagttatttctatggaaaag |
8809088 |
T |
|
| Q |
149 |
acctctagtcctagctccaaaaaccacactctacacgtggcgaaaagagttcaaaaaatggaagattcctgtgccggtttatcttatcca |
238 |
Q |
| |
|
||| || | || || || ||| ||||||||||| ||||| ||| ||||||||||||||||| || |||||| || ||||||||||| |
|
|
| T |
8809087 |
accattaatacttgcgccgaaatttacactctacacatggcgcaaatagttcaaaaaatggaaggttattgtgcccgtgtatcttatcca |
8808998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 8808953 - 8808899
Alignment:
| Q |
289 |
ttcttcctggatttccaagaccttctagtgatgtcaaacatgttttggattgtct |
343 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
8808953 |
ttcttcctggagttccaagaccttctggtgatgtaaaacatgttttggattgtct |
8808899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 23 - 238
Target Start/End: Original strand, 36374903 - 36375118
Alignment:
| Q |
23 |
atcactcatggaagaaaaatccaactcaagtggtggctgtgttatatcacatgctcctggagcaggaaaaacctttctcatcatttcttttcttgtaagt |
122 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
36374903 |
atcactcatggaagaaaaatctaacacaagtggtggctgtgttatatctcatgctcctggagctggaaaaacctttctcatcatctcttttcttgtaagc |
36375002 |
T |
|
| Q |
123 |
tacttgaaattatttccagggaaacgacctctagtcctagctccaaaaaccacactctacacgtggcgaaaagagttcaaaaaatggaagattcctgtgc |
222 |
Q |
| |
|
|| |||||||||||||||| |||| |||| | |||||||||||||| |||||||||||||| |||| |||||||||| |||||||||| ||||| ||| |
|
|
| T |
36375003 |
tatttgaaattatttccagagaaaagaccattggtcctagctccaaagaccacactctacacatggcaaaaagagttcgaaaaatggaatattcccatgc |
36375102 |
T |
|
| Q |
223 |
cggtttatcttatcca |
238 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
36375103 |
cggtgtatcttatcca |
36375118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 35960040 - 35959913
Alignment:
| Q |
54 |
ggtggctgtgttatatcacatgctcctggagcaggaaaaacctttctcatcatttcttttcttgtaagttacttgaaattatttccagggaaacgacctc |
153 |
Q |
| |
|
||||||||||| ||||| ||| |||||||||| |||||||| |||||||||||| |||||||||| || ||| |||| ||||| || ||||| |||||| |
|
|
| T |
35960040 |
ggtggctgtgtgatatctcatactcctggagccggaaaaacttttctcatcattgcttttcttgttagctacctgaagttattcccggggaagagacctc |
35959941 |
T |
|
| Q |
154 |
tagtcctagctccaaaaaccacactcta |
181 |
Q |
| |
|
|||| || ||||||||||| || ||||| |
|
|
| T |
35959940 |
tagttcttgctccaaaaactacgctcta |
35959913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 361
Target Start/End: Original strand, 165234 - 165316
Alignment:
| Q |
279 |
aaatcaatgattcttcctggatttccaagaccttctagtgatgtcaaacatgttttggattgtctcagcaagatacaaaagtg |
361 |
Q |
| |
|
||||||||| |||||| | || ||||||||||||| |||| | |||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
165234 |
aaatcaatggttcttctttgacttccaagaccttcaagtggtatcaaacatgttttggattgtcttagcaagatccaaaagtg |
165316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 165020 - 165083
Alignment:
| Q |
35 |
agaaaaatccaactcaagtggtggctgtgttatatcacatgctcctggagcaggaaaaaccttt |
98 |
Q |
| |
|
|||||||||||| ||||| | || ||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
165020 |
agaaaaatccaaaacaagtcgcggttgtgttatatcacatgctcctggagaaagaaaaaccttt |
165083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 310 - 383
Target Start/End: Original strand, 65946 - 66019
Alignment:
| Q |
310 |
cttctagtgatgtcaaacatgttttggattgtctcagcaagatacaaaagtggcactcacaccctagtgttctt |
383 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| | |||||||||||||| ||| | ||||||||||||| |||| |
|
|
| T |
65946 |
cttctagtgatgttaaatatgttttggattgtgttagcaagatacaaaaatggtattcacaccctagtgctctt |
66019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 65730 - 65861
Alignment:
| Q |
88 |
gaaaaacctttctcatcatttcttttcttgtaagttacttgaaattatttccagggaaacgacctctagtcctagctccaaaaaccacactc----taca |
183 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||| ||| | |||||||| |||||| | ||| ||| ||| || |||||| ||| |||| |||| |
|
|
| T |
65730 |
gaaaaacctttc---tcatttctattcttccaagttaattgcagttatttcctgggaaaag-cctttagcccttgcaccaaaatccatactctacgtaca |
65825 |
T |
|
| Q |
184 |
cgtggcgaaaagagttcaaaaaatggaagattcctg |
219 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
65826 |
catggcgaaaagagttcaaaaaatggaaggttcctg |
65861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 310 - 383
Target Start/End: Complemental strand, 132686 - 132613
Alignment:
| Q |
310 |
cttctagtgatgtcaaacatgttttggattgtctcagcaagatacaaaagtggcactcacaccctagtgttctt |
383 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| | |||||||||||||| ||| | ||||||||||||| |||| |
|
|
| T |
132686 |
cttctagtgatgttaaatatgttttggattgtgttagcaagatacaaaaatggtattcacaccctagtgctctt |
132613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 132902 - 132771
Alignment:
| Q |
88 |
gaaaaacctttctcatcatttcttttcttgtaagttacttgaaattatttccagggaaacgacctctagtcctagctccaaaaaccacactc----taca |
183 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||| ||| | |||||||| |||||| | ||| ||| ||| || |||||| ||| |||| |||| |
|
|
| T |
132902 |
gaaaaacctttc---tcatttctattcttccaagttaattgcagttatttcctgggaaaag-cctttagcccttgcaccaaaatccatactctacgtaca |
132807 |
T |
|
| Q |
184 |
cgtggcgaaaagagttcaaaaaatggaagattcctg |
219 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
132806 |
catggcgaaaagagttcaaaaaatggaaggttcctg |
132771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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