View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_53 (Length: 387)
Name: NF7721_low_53
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 374
Target Start/End: Complemental strand, 8196623 - 8196263
Alignment:
| Q |
14 |
acatcagagaatgtgtactgaatactctagattcttggctagctgctgttcatcttgataaaatggtctgttccggctcctgatttcgtttgtattctgt |
113 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8196623 |
acatgagagaatgtgtactgaatactttagattcttggctagctgctgttcatcttgataaaatggtctgttccggctcctgatttcgtttgtattctgt |
8196524 |
T |
|
| Q |
114 |
tattcttgtctttttgtatgggctgaacatgatgtaactgtaggtgacatatgttgcaattgctttggtggattccaaacttggtgtggaaggacgcaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8196523 |
tattcttgtctttttgtatgggctgaacatgatgtaactgtaggtgacatatgttgcaattgctttggtggattccaaacttggtgtggaaggacgcaaa |
8196424 |
T |
|
| Q |
214 |
gatctttttgattggttgtctaggcaactttttgggttaagtagttttgctgaagctgcacaactgctgaagccagcttcttccgcaatggcagtacgtc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8196423 |
gatctttttgattggttgtctaggcaactttttgggttaagtagttttgctgaagctgcacaactgctgaagccagcttcttctgcaatggcagtacgtc |
8196324 |
T |
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| Q |
314 |
tggttactcaaccatgccctcacttgtccatcattatctattcagttctaatgcgtaattt |
374 |
Q |
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| T |
8196323 |
tggttactcaaccatgccctcacttgtccatcattatctattctgttctaatgcgtaattt |
8196263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 14 - 324
Target Start/End: Complemental strand, 42353746 - 42353437
Alignment:
| Q |
14 |
acatcagagaatgtgtactgaatactctagattcttggctagctgctgttcatcttgataaaatggtctgttccggctcctgatttcgtttgtattctgt |
113 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||||| |||||||||| |
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| T |
42353746 |
acatgagagaatgtgtactgaatactctagactcttggctagctgctgttcatcttgataaaatggtctttcctttctcctgattt----tgtattctgt |
42353651 |
T |
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| Q |
114 |
tattcttgtctttttgtatg--ggctgaacatgatgtaactgtaggtgacatatgttgcaattgctttggtggattccaaacttggtgtggaaggacgca |
211 |
Q |
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||||||| | ||||||| | | ||||||||||||| ||||||||| ||||||||||||||| || |||| |||||||||||||||| |||||| || | |
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| T |
42353650 |
tattcttctttttttgtcttttgcctgaacatgatgttactgtaggttacatatgttgcaatttctctggttgattccaaacttggtgcggaagggcgta |
42353551 |
T |
|
| Q |
212 |
aagatctttttgattggttgtctaggcaactttttgggttaagtagttttgctgaagctgcacaactgctgaagccagcttcttccgcaatggcagtacg |
311 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |
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| T |
42353550 |
aagatctttttgattggttgtctaggcaactttctgggttaagcaattttgctgaagctgcacaactgctgaagccagcctcttctgcaatggcagtatg |
42353451 |
T |
|
| Q |
312 |
-tctggttactcaa |
324 |
Q |
| |
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||||||||||||| |
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| T |
42353450 |
ttctggttactcaa |
42353437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 136 - 324
Target Start/End: Original strand, 32066944 - 32067132
Alignment:
| Q |
136 |
ctgaacatgatgtaactgtaggtgacatatgttgcaattgctttggtggattccaaacttggtgtggaaggacgcaaagatctttttgattggttgtcta |
235 |
Q |
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||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||| ||||| ||| ||| || || ||||| ||||||| ||| |||| |
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| T |
32066944 |
ctgaacatgatgttactataggttacatatgttgcaactgctttggtggattctaaact--ctgtagaatagcgtaatgatctatttgatttgttatcta |
32067041 |
T |
|
| Q |
236 |
ggcaac-tttttgggttaagtagttttgctgaagctgcacaactgctgaagccagcttcttccgcaatggcagtacg-tctggttactcaa |
324 |
Q |
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|| ||| |||||| ||||||||||||| ||||| ||||||| || ||| |||||| |||| |||||| ||||||| || |||||||||| |
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| T |
32067042 |
ggaaacttttttgagttaagtagtttttatgaaggtgcacaattgttgatgccagcctcttttgcaatgacagtacgttcaggttactcaa |
32067132 |
T |
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