View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_54 (Length: 385)
Name: NF7721_low_54
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 52845183 - 52844833
Alignment:
| Q |
18 |
caattgctatgtaatttagtgataaagtgaataccaatcgaagaatttgatgagatctggagcttgtttcattcatggcagtttcttctgttgtcctttc |
117 |
Q |
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| T |
52845183 |
caattgctatgtaatttagtgataaagtgaataccaatcgaagaatttgatgagatctggagcttgtttcattcatggcagtttcttctgttgtcctttc |
52845084 |
T |
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| Q |
118 |
agctgcaagataatgatatggcttgaaatggagcatcagaaaatatcaaaagcattataagaaaaacactaactagacctagtacctgcacattttgaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52845083 |
agctgcaagataatgatatggcttgaaatggagcatcagaaaatatcaaaagcattataagaaaaacactaactagacctagtacctgcacattttgaaa |
52844984 |
T |
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| Q |
218 |
taagttgctgcaattgactcctctctgtcagagtctcctcagtaagtttctcaacaacagtccctttctgttcaagggacatagattctcaaccattcga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52844983 |
taagttgctgcaattgactcctctctgtcagagtctcctcagtaagtttctcaacaacagtccctttctgttcaagggacatagattctcaaccattcga |
52844884 |
T |
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| Q |
318 |
aagaactaaagccagaaagtcttgaccattattatataataaggaaaatat |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52844883 |
aagaactaaagccagaaagtcttgaccattattatataataaggaaaatat |
52844833 |
T |
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