View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7721_low_57 (Length: 381)

Name: NF7721_low_57
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7721_low_57
NF7721_low_57
[»] chr1 (17 HSPs)
chr1 (54-321)||(1161327-1161594)
chr1 (30-321)||(16584758-16585050)
chr1 (38-321)||(8083994-8084282)
chr1 (85-321)||(11619973-11620208)
chr1 (84-240)||(25785805-25785962)
chr1 (32-282)||(18461120-18461362)
chr1 (30-175)||(42010010-42010155)
chr1 (206-319)||(42009880-42009999)
chr1 (232-311)||(25787286-25787365)
chr1 (75-283)||(11911629-11911839)
chr1 (29-122)||(32678514-32678607)
chr1 (38-120)||(8414674-8414756)
chr1 (38-158)||(512961-513081)
chr1 (329-370)||(1161252-1161293)
chr1 (329-368)||(11620253-11620292)
chr1 (329-368)||(16584674-16584713)
chr1 (53-120)||(27320560-27320627)
[»] chr7 (17 HSPs)
chr7 (30-321)||(7352264-7352555)
chr7 (29-321)||(39695086-39695370)
chr7 (91-321)||(46993309-46993546)
chr7 (83-316)||(7994998-7995234)
chr7 (30-317)||(3996837-3997128)
chr7 (62-282)||(46265238-46265457)
chr7 (85-217)||(11727326-11727449)
chr7 (30-320)||(48070614-48070911)
chr7 (38-121)||(12013026-12013109)
chr7 (30-175)||(27226944-27227089)
chr7 (111-262)||(2197623-2197775)
chr7 (215-283)||(25545139-25545207)
chr7 (33-167)||(25545256-25545390)
chr7 (62-167)||(2922986-2923090)
chr7 (38-167)||(12471783-12471911)
chr7 (81-129)||(31136196-31136244)
chr7 (42-94)||(35738239-35738291)
[»] chr4 (10 HSPs)
chr4 (30-316)||(23107800-23108097)
chr4 (29-321)||(24466203-24466502)
chr4 (52-319)||(28319186-28319454)
chr4 (33-256)||(4413456-4413681)
chr4 (38-283)||(53393087-53393333)
chr4 (30-119)||(39839064-39839153)
chr4 (79-257)||(8056760-8056939)
chr4 (33-167)||(8606181-8606315)
chr4 (193-283)||(19682001-19682091)
chr4 (83-175)||(42141300-42141393)
[»] chr5 (12 HSPs)
chr5 (33-305)||(19947711-19947984)
chr5 (30-321)||(31895896-31896181)
chr5 (89-279)||(16746357-16746548)
chr5 (29-205)||(16746550-16746727)
chr5 (52-280)||(1498129-1498358)
chr5 (38-167)||(29126091-29126220)
chr5 (59-122)||(7239378-7239441)
chr5 (59-122)||(7244554-7244617)
chr5 (329-368)||(16746243-16746282)
chr5 (329-368)||(31896214-31896253)
chr5 (40-78)||(41092125-41092163)
chr5 (61-121)||(30126223-30126283)
[»] scaffold0879 (1 HSPs)
scaffold0879 (29-321)||(468-767)
[»] chr8 (11 HSPs)
chr8 (30-321)||(44223220-44223503)
chr8 (30-319)||(7956236-7956516)
chr8 (30-305)||(35948827-35949101)
chr8 (18-297)||(17722330-17722608)
chr8 (30-257)||(9505015-9505244)
chr8 (83-283)||(3767589-3767789)
chr8 (30-283)||(16570794-16571047)
chr8 (30-167)||(32321799-32321936)
chr8 (38-175)||(34760847-34760975)
chr8 (30-82)||(9040427-9040479)
chr8 (79-115)||(8266063-8266099)
[»] chr2 (14 HSPs)
chr2 (30-321)||(31111413-31111705)
chr2 (32-321)||(13852163-13852453)
chr2 (83-283)||(4638207-4638417)
chr2 (149-321)||(36009278-36009459)
chr2 (30-283)||(29109094-29109348)
chr2 (83-320)||(38607020-38607266)
chr2 (42-167)||(3919904-3920029)
chr2 (30-149)||(12893980-12894099)
chr2 (38-283)||(5526225-5526470)
chr2 (329-368)||(4638506-4638545)
chr2 (29-116)||(30906942-30907029)
chr2 (75-161)||(37630375-37630461)
chr2 (90-131)||(36009229-36009270)
chr2 (75-167)||(35954794-35954886)
[»] chr3 (11 HSPs)
chr3 (30-282)||(46655514-46655768)
chr3 (33-283)||(44471020-44471271)
chr3 (29-167)||(30554588-30554726)
chr3 (29-257)||(11503284-11503513)
chr3 (38-129)||(46892612-46892703)
chr3 (30-320)||(26757593-26757892)
chr3 (85-283)||(44681930-44682129)
chr3 (32-167)||(12937777-12937912)
chr3 (75-161)||(44285605-44285691)
chr3 (66-284)||(27524053-27524270)
chr3 (85-175)||(779539-779629)
[»] scaffold0565 (1 HSPs)
scaffold0565 (90-320)||(1736-1970)
[»] chr6 (9 HSPs)
chr6 (40-283)||(9826747-9826991)
chr6 (60-167)||(23301441-23301548)
chr6 (33-166)||(7176529-7176662)
chr6 (97-283)||(11846307-11846494)
chr6 (60-167)||(23300455-23300562)
chr6 (30-120)||(11971456-11971546)
chr6 (38-175)||(2454150-2454287)
chr6 (215-283)||(1208744-1208812)
chr6 (85-161)||(32613901-32613977)
[»] scaffold0070 (1 HSPs)
scaffold0070 (30-120)||(33729-33819)
[»] scaffold0564 (1 HSPs)
scaffold0564 (30-167)||(6311-6452)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 54 - 321
Target Start/End: Complemental strand, 1161594 - 1161327
Alignment:
Q  54 aaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatcta 153  Q
    |||||| |||| | |||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  1161594 aaccaacgaaatcaaaagtttaaaccgaaccaaaccgaaaaa-tatccgaccttatttggttcggtttgaaaccaatccaagccaatcgaaaccgatcta 1161496  T
Q  154 gtttggtttggttcatggtttta-atttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactccttattttactaatattatcctacctc 252  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1161495 gtttggtttggttcatggtttttcatttcgatatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctc 1161396  T
Q  253 acacaaacttatggttaagcccaaaattaaacataaaatattttttaatccattcactttctctcatct 321  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1161395 acacaaacttatggttcagcccaaaattaaacataaaatattttttaatccattcactttctcttatct 1161327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 30 - 321
Target Start/End: Complemental strand, 16585050 - 16584758
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    ||||||| ||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  16585050 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaaacgaaaaaatatccaaccttgtttggttcggtttgaaaccga 16584951  T
Q  130 tccgagccaatcgaaaccgatctagtttggtttggttcatggtttta-atttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactcctt 228  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||| || |||||||| |||||||    
T  16584950 tccgaaccaatcgataccgatctagtttggtttggttcatggttttttatttcgagatccgtgaaaccgatgaaccaatctgatgataaccaaactcctt 16584851  T
Q  229 attttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaacataaaatattttttaatccattcactttctctcatct 321  Q
    ||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  16584850 attttactaatattatcatacctcacacaaacttatggttagacccaaaattaaacataaaatactttttaatccattcactttctctaatct 16584758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 38 - 321
Target Start/End: Original strand, 8083994 - 8084282
Alignment:
Q  38 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa-aatatccgaccttatttggttcggtttgaaaccgatccgagc 136  Q
    ||||||||||| | | |||||| |||| |||||||||||||  || ||||||||||| ||||||||||||| ||||||| ||||||||||| |||||| |    
T  8083994 taagtggttcggacataaccaacgaaatcgaaagtccaaactaaatcaaaccgaaaaaaatatccgaccttgtttggtttggtttgaaaccaatccgaac 8084093  T
Q  137 caatcgaaaccgatctagtttggtttggttcatgg-ttttaatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactccttattttac 235  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||||| |||||| |||||||| |||||||||||||||||||||||    
T  8084094 caatcgaaaccgatctagtttggtttggttcatggtttttcatttcaagatccgtgaaactgatgaatcaatccgatgataaccacactccttattttac 8084193  T
Q  236 taat---attatcctacctcacacaaacttatggttaagcccaaaattaaacataaaatattttttaatccattcactttctctcatct 321  Q
    ||||    ||||||||||||||||||||| ||||||| || ||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  8084194 taatccatttatcctacctcacacaaactcatggttaggcacaaaattaaacataaaataatttttaatctattcactttctctcatct 8084282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 85 - 321
Target Start/End: Original strand, 11619973 - 11620208
Alignment:
Q  85 aaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtttggttcatgg-ttttaatttcga 183  Q
    ||||| ||||||||||||| ||| |||||||| ||||||||||||||| | | |||||||||||||||||||||||||||||||||| |||| |||| ||    
T  11619973 aaaccaaaaaaatatccgatcttgtttggttcagtttgaaaccgatccaaactaatcgaaaccgatctagtttggtttggttcatggtttttcattttga 11620072  T
Q  184 tatccgtgaaaccgatgaaccaatccgaagataaccacactccttattttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaa 283  Q
     ||| ||||||||||||||||||||||| ||||  |||||| ||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  11620073 gatctgtgaaaccgatgaaccaatccgatgatactcacactacttattttactaatattatcctacct--cacaaacttatggttaaacccaaaattaaa 11620170  T
Q  284 cataaaatattttttaatccattcactttctctcatct 321  Q
    ||| ||||| ||||||||| |||||||||||| |||||    
T  11620171 catgaaatactttttaatcaattcactttctcccatct 11620208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 84 - 240
Target Start/End: Original strand, 25785805 - 25785962
Alignment:
Q  84 caaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtttggttcatgg-ttttaatttcg 182  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||| ||||||    
T  25785805 caaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccgatccgaaccaatcgaaaccgatatagtttggtttggttcatggtttttcatttcg 25785904  T
Q  183 atatccgtgaaaccgatgaaccaatccgaagataaccacactccttattttactaata 240  Q
    | ||||||||||||||||||||||||||| |||||||||| || ||||||||||||||    
T  25785905 agatccgtgaaaccgatgaaccaatccgatgataaccacattctttattttactaata 25785962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 32 - 282
Target Start/End: Original strand, 18461120 - 18461362
Alignment:
Q  32 ggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatc 131  Q
    ||||| |||||||||| || |||||||| |||||| |||||||||||| |||||||         ||||||||||| ||| ||||||||| ||| |||||    
T  18461120 ggggtgtaagtggttcaaacaaaaccaacgaaaccaaaagtccaaaccaaaccaaa---------tatccgaccttgtttagttcggtttcaaatcgatc 18461210  T
Q  132 cgagccaatcgaaaccgatctagtttggtttggttcatggtttta-atttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactccttat 230  Q
     |  |||||| |||||||| ||||||||||||||||||| ||||  ||||||| ||||||||||||||||||||||||||| ||||||||||||| |||     
T  18461211 tggaccaatcaaaaccgatttagtttggtttggttcatgattttttatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcattaa 18461310  T
Q  231 tttactaatattatcctacctcacacaaacttatggttaagcccaaaattaa 282  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  18461311 tttattaatattatccaacctcgcacaaacttatggttaagcccaaaattaa 18461362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 175
Target Start/End: Complemental strand, 42010155 - 42010010
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    ||||||| |||| |||||| || ||||||| |||||||| ||||||||| | ||||||||||||||||||||||| || |||||||||||||||||||||    
T  42010155 taggggtgtaagcggttcggattaaaccaacgaaaccgatagtccaaactggaccaaaccgaaaaaatatccgacattgtttggttcggtttgaaaccga 42010056  T
Q  130 tccgagccaatcgaaaccgatctagtttggtttggttcatggtttt 175  Q
    ||| | ||||| |||||||||||||||| |||||  ||||||||||    
T  42010055 tccaaaccaattgaaaccgatctagtttagtttgactcatggtttt 42010010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 206 - 319
Target Start/End: Complemental strand, 42009999 - 42009880
Alignment:
Q  206 atccgaagataaccacactccttattttactaatattatcctacctcacacaaacttatggttaagcccaaaatta-----aacataaaata-tttttta 299  Q
    |||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| |||||||     ||||||||||| ||||||     
T  42009999 atccgatgataaccacactccttatattactaatagtatcctacctcacacaaacttatggttaggcctaaaattaaagtcaacataaaatacttttttt 42009900  T
Q  300 atccattcactttctctcat 319  Q
    ||||||||| ||||||||||    
T  42009899 atccattcattttctctcat 42009880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 25787286 - 25787365
Alignment:
Q  232 ttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaacataaaatattttttaatccattcactt 311  Q
    ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| ||||| |||||||||||| |||||    
T  25787286 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccatgcactt 25787365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 75 - 283
Target Start/End: Original strand, 11911629 - 11911839
Alignment:
Q  75 aaaccgaaccaaaccgaaaaaa-tatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtttggttcatgg-t 172  Q
    ||||| ||||||  |||||||| ||||||||||| ||||||||||||  ||||||| |||| |||| | |||||||||||||||| ||| |||| ||| |    
T  11911629 aaaccaaaccaattcgaaaaaagtatccgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaaccgatctagtttgatttagttcttggtt 11911728  T
Q  173 tttaatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactccttattttactaatattatcctacctcacacaaacttatggttaagc 272  Q
    |||||||| || |||||   |||||||||||||| ||||   ||| | ||||||  |||| | |||||||||||  | |||| || ||||||| ||||||    
T  11911729 tttaattttgaaatccgatgaaccgatgaaccaaaccgatactaaactcactccccatttgagtaatattatccctcatcacgcacacttatgattaagc 11911828  T
Q  273 ccaaaattaaa 283  Q
     ||||||||||    
T  11911829 tcaaaattaaa 11911839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 32678607 - 32678514
Alignment:
Q  29 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttg 122  Q
    |||| ||| ||||||||||||| |||||| |||||| ||||| | |||||||||| || |||||||||||||||||||| ||||||| ||||||    
T  32678607 atagaggtgtaagtggttcgaacaaaaccgatgaaatcgaaaattcaaaccgaactaagccgaaaaaatatccgaccttgtttggtttggtttg 32678514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 8414756 - 8414674
Alignment:
Q  38 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtt 120  Q
    ||||||||||| | |||||| ||||||| |||| ||||||| |||| ||||||||||| ||||||||||| ||||||| ||||    
T  8414756 taagtggttcggacaaaaccgatgaaactgaaaatccaaactgaacaaaaccgaaaaagtatccgaccttgtttggtttggtt 8414674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 158
Target Start/End: Original strand, 512961 - 513081
Alignment:
Q  38 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagcc 137  Q
    ||||||||||| | |||||  |||||| | |||  ||||| ||||||||||||||||| ||||| | ||| ||||||||||||  ||||| | |||| ||    
T  512961 taagtggttcggacaaaactgatgaaatcaaaaacccaaatcgaaccaaaccgaaaaagtatccaatcttgtttggttcggttcaaaaccaaaccgaacc 513060  T
Q  138 aatcgaaaccgatctagtttg 158  Q
    || | ||||||||||||||||    
T  513061 aacctaaaccgatctagtttg 513081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 1161293 - 1161252
Alignment:
Q  329 gaaaccctagccgtcaaacacaccaaacccattgttcatctc 370  Q
    |||||||||| |||||| ||||||||||||||||||||||||    
T  1161293 gaaaccctagtcgtcaaccacaccaaacccattgttcatctc 1161252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 368
Target Start/End: Original strand, 11620253 - 11620292
Alignment:
Q  329 gaaaccctagccgtcaaacacaccaaacccattgttcatc 368  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  11620253 gaaaccctagccgttaaccacaccaaacccattgttcatc 11620292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 368
Target Start/End: Complemental strand, 16584713 - 16584674
Alignment:
Q  329 gaaaccctagccgtcaaacacaccaaacccattgttcatc 368  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  16584713 gaaaccctagccgtcaaccacaccaagcccattgttcatc 16584674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 27320627 - 27320560
Alignment:
Q  53 aaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtt 120  Q
    ||||| |||||||||||| || |||| ||| |||| | ||||| ||||||||||| ||||||||||||    
T  27320627 aaaccgatgaaaccgaaaatctaaactgaatcaaatcaaaaaagtatccgaccttgtttggttcggtt 27320560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 30 - 321
Target Start/End: Complemental strand, 7352555 - 7352264
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    ||||||| ||| ||||||  | |||||||| ||||||||||||||||| | |||| ||||||||||||||||||| |||||||||| |||||||||||||    
T  7352555 taggggtgtaattggttcagacaaaaccaacgaaaccgaaagtccaaatcaaaccgaaccgaaaaaatatccgactttatttggtttggtttgaaaccga 7352456  T
Q  130 tccgagccaatcgaaaccgatctagtttggtttggttcatgg-ttttaatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactcctt 228  Q
    ||||| ||||||||||||| |||||||||||||||||||||| |||| ||||||| ||||||||||||||| || |||||||| ||||||||||||||||    
T  7352455 tccgaaccaatcgaaaccggtctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat-aatcaatccgatgataaccacactcctt 7352357  T
Q  229 attttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaacataaaatattttttaatccattcactttctctcatct 321  Q
    ||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||  |||||||||||||||||||||||||||    
T  7352356 attttactaatattatcctacgtcacacaaacttatagttagacccaaaattaaacataaaatacgttttaatccattcactttctctcatct 7352264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 29 - 321
Target Start/End: Original strand, 39695086 - 39695370
Alignment:
Q  29 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccg 128  Q
    |||||||| |||||||||||   |||||||| |||||||||||||||| ||     |||||||| | |||||||||||| ||||||||||||||||||||    
T  39695086 ataggggtgtaagtggttcgggcaaaaccaacgaaaccgaaagtccaaccc-----aaaccgaagagatatccgaccttgtttggttcggtttgaaaccg 39695180  T
Q  129 atccgagccaatcgaaaccgatctagtttggtttggttcatgg-ttttaatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactcct 227  Q
    ||| || ||||||||||| ||| |||||||||||||||||||| |||| |||||||  ||||||||||||||||||||||| || ||||||| |||||||    
T  39695181 atctgaaccaatcgaaactgatatagtttggtttggttcatggtttttcatttcgaggtccgtgaaaccgatgaaccaatctgatgataacctcactcct 39695280  T
Q  228 tattttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaacataaaatattttttaatccattcactttctctcatct 321  Q
    ||||||||    |||||| |||||||||||||||||||||||  ||||||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  39695281 tattttac----attatcttacctcacacaaacttatggttagacccaaaattaaacataaaataatttttcatccattcattttctctcatct 39695370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 91 - 321
Target Start/End: Original strand, 46993309 - 46993546
Alignment:
Q  91 aaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtttggttcatggtttta-atttcgatatccg 189  Q
    ||||||||| ||||||| ||||| |||||||||||  |||||||  |||||||||| ||||||||||||||||||||||||||||  ||||||| |||||    
T  46993309 aaaaaatattcgaccttgtttgggtcggtttgaaattgatccgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccg 46993408  T
Q  190 tgaaaccgatgaaccaatccgaagataaccacactccttattttactaatattatcctacctcacacaaacttatggttaagcccaaaatta------aa 283  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||      ||    
T  46993409 tgaaaccgattaaccaatccgatgataaccacactccttattttactaatattatcgtacctcacacaaacttaaggttaagcccaaaattaaagtccaa 46993508  T
Q  284 cataaaatattttttaatccattcactttctctcatct 321  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  46993509 cataaaatactttttaatccattcaatttctctcatct 46993546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 83 - 316
Target Start/End: Original strand, 7994998 - 7995234
Alignment:
Q  83 ccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtttggttcatgg-ttttaatttc 181  Q
    |||||| ||||||||||  |||||| ||||||||||||  ||| |||||||| ||||| |||||||||||||||||||||||||||||| |||| ||||     
T  7994998 ccaaactgaaaaaatatttgaccttgtttggttcggttgaaaatcgatccgaaccaattgaaaccgatctagtttggtttggttcatggtttttcatttt 7995097  T
Q  182 gatatccgtgaaaccgatgaaccaatccgaagataaccacactccttattttactaatattatcctacctcacacaaacttatggttaagcccaaaatta 281  Q
    || || ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||  ||||||||||||||| || |||||||||    
T  7995098 gagattcgtgaaaccgatgaaccaatccgataataaccacactccttattttactaatattatcttacct--cacaaacttatggtt-aggccaaaatta 7995194  T
Q  282 -----aacataaaatattttttaatccattcactttctct 316  Q
         |||||| |||| ||||||||||||||| |||||||    
T  7995195 aagtcaacatagaatactttttaatccattcattttctct 7995234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 30 - 317
Target Start/End: Complemental strand, 3997128 - 3996837
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    ||||||| ||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||  ||||||| || ||||||| ||||  |||||||    
T  3997128 taggggtgtaagtggttcggacaaaaccaatgaaaccgaaagtccaaaccgtaccaaaccgaagaagaatccgactttgtttggtttggttcaaaaccga 3997029  T
Q  130 tccgagccaatcgaaaccgatctagtttggtttggttcatggttttaatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactcctta 229  Q
     || | |||||| ||||| | || |||||||| |||||  |||||| |||| || ||||  | |||| ||||||| | |||  | ||||  ||||||  |    
T  3997028 acctaaccaatctaaaccaaccttgtttggttcggttctcggttttcattttgagatccaaggaacctatgaaccgaaccgttggtaactccactcccaa 3996929  T
Q  230 ttttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaa------cataaaatattttttaatccattcactttctctc 317  Q
    ||||||||||| || |   ||||||||  ||||||| ||| |||||||||||||      ||||||||| || ||||  |||||||||||||||    
T  3996928 ttttactaataataactctcctcacac--acttatgattatgcccaaaattaaagtcaagcataaaatacttcttaagtcattcactttctctc 3996837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 62 - 282
Target Start/End: Complemental strand, 46265457 - 46265238
Alignment:
Q  62 aaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtt 161  Q
    |||||||||||||||||||||||||||| ||||  ||||||||||| |  |||||||||  ||||||| ||||  ||||| |||||||||| ||||||||    
T  46265457 aaaccgaaagtccaaaccgaaccaaaccaaaaatgtatccgaccttgtcgggttcggttcaaaaccgaaccgaatcaatctaaaccgatcttgtttggtt 46265358  T
Q  162 tggttcatggttt-taatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactccttattttactaatattatcctacctcacacaaac 260  Q
    |||||    |||| | |||| || ||||  ||||||||||||||||  | | | ||||  ||||||| ||||||||| |||| |||| ||||||||  ||    
T  46265357 tggttttcagtttgtcattttgagatccaagaaaccgatgaaccaaatcaatgttaactccactcctcattttactattattgtccttcctcacac--ac 46265260  T
Q  261 ttatggttaagcccaaaattaa 282  Q
    ||||| ||| ||||||||||||    
T  46265259 ttatgattatgcccaaaattaa 46265238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 85 - 217
Target Start/End: Complemental strand, 11727449 - 11727326
Alignment:
Q  85 aaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtttggttcatgg-ttttaatttcga 183  Q
    |||||||||||||||  |||||| |||||||||||||||||||          |||| ||||||||||||||||||||||||| ||| |||| |||||||    
T  11727449 aaaccgaaaaaatatatgaccttgtttggttcggtttgaaacc----------aatcaaaaccgatctagtttggtttggttcgtggtttttcatttcga 11727360  T
Q  184 tatccgtgaaaccgatgaaccaatccgaagataa 217  Q
     |||||| |||||||| ||||||||||| |||||    
T  11727359 gatccgtaaaaccgataaaccaatccgatgataa 11727326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 320
Target Start/End: Original strand, 48070614 - 48070911
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    ||||||| ||||||||||| | |||| | || ||||||||| || ||||||||| ||||| ||||||||||||||||| |||| || ||||  |||||||    
T  48070614 taggggtgtaagtggttcggacaaaatcgatcaaaccgaaaatctaaaccgaactaaaccaaaaaaatatccgaccttgtttgatttggttcaaaaccga 48070713  T
Q  130 tccgagccaatcgaaaccgatctagtttggtttggttcatgg-ttttaatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactcctt 228  Q
     |||| | || | |||||||||||||||| || |||||  || ||||||||| || ||||    ||||||| |||  | |||| | ||||| |||||       
T  48070714 accgaactaacctaaaccgatctagtttgattcggttctcggtttttaattttgagatccaaagaaccgataaactgaaccgatgttaacctcactcacc 48070813  T
Q  229 attttactaatattatcctacctcacacaaacttatggttaagcccaaaatta------aacataaaatattttttaatccattcactttctctcatc 320  Q
    |||| | ||||| |||||  | ||||||| ||||||| |||| | ||||||||      ||||||||||| || ||||| |||||||||||| |||||    
T  48070814 atttcagtaataatatccctcttcacacacacttatgattaatctcaaaattaaagtccaacataaaatacttcttaattcattcactttctttcatc 48070911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 12013109 - 12013026
Alignment:
Q  38 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggttt 121  Q
    ||||||||| |||||||||| |||||| ||||| |  |||  ||||| |||||||||| |||||||||||||||||||||||||    
T  12013109 taagtggtttgaataaaaccgatgaaatcgaaaatttaaattgaaccgaaccgaaaaagtatccgaccttatttggttcggttt 12013026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 175
Target Start/End: Complemental strand, 27227089 - 27226944
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    ||||||| ||||| ||||| | |||||| |||||| | ||||||||||||||| |||||  ||||  ||||| | ||| | ||||| || |  || ||||    
T  27227089 taggggtgtaagttgttcggacaaaaccgatgaaatcaaaagtccaaaccgaaacaaacttaaaaggtatcccatcttgtctggtttggatcaaagccga 27226990  T
Q  130 tccgagccaatcgaaaccgatctagtttggtttggttcatggtttt 175  Q
     |||| |||||| ||||||| || |||||||| ||||| |||||||    
T  27226989 accgaaccaatctaaaccgaccttgtttggttcggttcttggtttt 27226944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 262
Target Start/End: Complemental strand, 2197775 - 2197623
Alignment:
Q  111 tggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtttggttcatggtttta-atttcgatatccgtgaaaccgatgaaccaatcc 209  Q
    ||||||||||  ||||||||| || |||||| ||| ||| || ||||| || |||||  ||||||  |||| || ||||  ||||||||| |||||| ||    
T  2197775 tggttcggttctaaaccgatctgaaccaatctaaatcgaccttgtttgattgggttctcggtttttcattttgagatccaagaaaccgatcaaccaaacc 2197676  T
Q  210 gaagataaccacactccttattttactaatattatcctacctcacacaaactt 262  Q
    || | ||||  ||||||  ||||||||||||||||||| |||| |||| ||||    
T  2197675 gatgctaacttcactccccattttactaatattatccttcctcgcacacactt 2197623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 25545207 - 25545139
Alignment:
Q  215 taaccacactccttattttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaa 283  Q
    ||||| ||||||  |||||| |||||||||||| ||||||| | ||||||| |||||| ||||||||||    
T  25545207 taacctcactccccattttagtaatattatcctgcctcacatacacttatgattaagctcaaaattaaa 25545139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 167
Target Start/End: Complemental strand, 25545390 - 25545256
Alignment:
Q  33 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatcc 132  Q
    |||| ||||||||||  | |||| | || ||| ||||| | |||||||| | ||||  ||||| ||| |||||||  |||||||||||  ||||||| |     
T  25545390 gggtgtaagtggttcagacaaaatcgataaaatcgaaaattcaaaccgagcaaaactaaaaaagtattcgaccttgattggttcggttcaaaaccgaact 25545291  T
Q  133 gagccaatcgaaaccgatctagtttggtttggttc 167  Q
     | |||| | |||||||||||||||||||||||||    
T  25545290 aaaccaacctaaaccgatctagtttggtttggttc 25545256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 167
Target Start/End: Original strand, 2922986 - 2923090
Alignment:
Q  62 aaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtt 161  Q
    ||||||||||||||||| |||||||||| ||||  ||| | ||||| | ||||||||||  ||||||| |||| |||||| | ||||| || ||||| ||    
T  2922986 aaaccgaaagtccaaac-gaaccaaaccaaaaatgtattcaaccttgtatggttcggttcaaaaccgaaccgaaccaatctacaccgaccttgtttgatt 2923084  T
Q  162 tggttc 167  Q
     |||||    
T  2923085 cggttc 2923090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 167
Target Start/End: Complemental strand, 12471911 - 12471783
Alignment:
Q  38 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagcc 137  Q
    ||||||||||| |||||||| ||||||  |||| |||||||||||| |||| |||||  ||||  | |||| ||||||| |||  ||||||| |||| ||    
T  12471911 taagtggttcggataaaaccgatgaaattgaaaatccaaaccgaacaaaactgaaaacgtatctcatctta-ttggttctgttcaaaaccgaaccgaacc 12471813  T
Q  138 aatcgaaaccgatctagtttggtttggttc 167  Q
    ||   ||| ||||||||||| ||| |||||    
T  12471812 aacttaaatcgatctagtttagttcggttc 12471783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 31136196 - 31136244
Alignment:
Q  81 aaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    ||||||||||||||| ||||||||||| |||| |||||||  |||||||    
T  31136196 aaccaaaccgaaaaagtatccgaccttgtttgattcggttcaaaaccga 31136244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 35738291 - 35738239
Alignment:
Q  42 tggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa 94  Q
    ||||||| |||||| | | ||||| |||||||||||||||||| |||||||||    
T  35738291 tggttcggataaaatcgacgaaacggaaagtccaaaccgaaccgaaccgaaaa 35738239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 30 - 316
Target Start/End: Complemental strand, 23108097 - 23107800
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    ||||||| ||||||||||| | |||||||| |||||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||||||||||||    
T  23108097 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaacaggaaaaatatccgaccttgtttggtttggtttgaaaccga 23107998  T
Q  130 tccgagccaatcgaaaccgatctagtttggtttggttcatgg-ttttaatttcgatatccgtgaaaccgatgaac----caatccgaagataaccacact 224  Q
    ||||| |||||||||||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||||||    |||||||| |||||||| |||    
T  23107997 tccgaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaaccgatgaaccaatcaatccgatgataaccatact 23107898  T
Q  225 ccttattttactaatattatcctacctcacacaaacttatggttaagcccaaaatta------aacataaaatattttttaatccattcactttctct 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||      ||||||||||| |||||||||||||||||||||||    
T  23107897 ccttattttactaatattatcctacctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatactttttaatccattcactttctct 23107800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 29 - 321
Target Start/End: Complemental strand, 24466502 - 24466203
Alignment:
Q  29 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccg 128  Q
    |||||||| ||||||||||  |  ||||||| |||||||| ||||||||||  ||||||| ||||||||||| || ||| ||||||||||||||||||||    
T  24466502 ataggggtgtaagtggttcagactaaaccaacgaaaccgatagtccaaaccagaccaaactgaaaaaatatctgatcttgtttggttcggtttgaaaccg 24466403  T
Q  129 atccgagccaatcgaaaccgatctagtttggtttggttcatggtttta-atttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactcct 227  Q
    |||||| ||||| ||||||||||||||||| ||||||||||||||||  |||| || ||||||||||||||||||||||||||| |||||||||||||||    
T  24466402 atccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatgataaccacactcct 24466303  T
Q  228 tattttactaatattatcctacctcacacaaacttatggttaagcccaaaatta------aacataaaatattttttaatccattcactttctctcatct 321  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||      ||||||||||| ||||||||||||||||||||||||||||    
T  24466302 tattttactaatattatcctacctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatactttttaatccattcactttctctcatct 24466203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 52 - 319
Target Start/End: Complemental strand, 28319454 - 28319186
Alignment:
Q  52 aaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatc 151  Q
    |||||||| |||| |||||||| ||| |||||||||||||||||||||| ||| || |||||||||||||||||||| ||||| |||||| ||| ||||     
T  28319454 aaaaccaacgaaatcgaaagtctaaatcgaaccaaaccgaaaaaatatctgacattgtttggttcggtttgaaaccgttccgaaccaatcaaaatcgatt 28319355  T
Q  152 tagtttggtttggttcatggtttta-atttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactccttattttactaatattatcctacc 250  Q
    || |||||||||||||||||||||  ||||||| || |||||| | |||||| ||||| || ||||||||||||||||||||||||||||||||||||||    
T  28319354 taatttggtttggttcatggtttttcatttcgagattcgtgaacctgatgaatcaatctgatgataaccacactccttattttactaatattatcctacc 28319255  T
Q  251 tcacacaaacttatggttaagcccaaaattaaacataaaatattttttaatccattcactttctctcat 319  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28319254 tcacacaaacttatggttaggcccaaaattaaacataaaatattttttaatcaattcactttctctcat 28319186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 33 - 256
Target Start/End: Original strand, 4413456 - 4413681
Alignment:
Q  33 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa-aatatccgaccttatttggttcggtttgaaaccgatc 131  Q
    |||| ||||||||||| |||||||||| |||||| ||||| ||||| |||| | |||||||| ||||||||| ||| ||||||||||||| |||||||||    
T  4413456 gggtgtaagtggttcggataaaaccaacgaaaccaaaagttcaaactgaactagaccgaaaaaaatatccgatcttgtttggttcggtttaaaaccgatc 4413555  T
Q  132 cgagccaatcgaaaccgatctagtttggtttggttcatgg-ttttaatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactccttat 230  Q
    ||| ||||||||||||||||||||||| |||||||||||| |||| ||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  4413556 cgaaccaatcgaaaccgatctagtttgctttggttcatggtttttcatttcgagatccgtgaaaccgataaaccaatccgatgataatcacactccttat 4413655  T
Q  231 tttactaatattatcctacctcacac 256  Q
    ||||||| ||||||||||||||||||    
T  4413656 tttactagtattatcctacctcacac 4413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 38 - 283
Target Start/End: Complemental strand, 53393333 - 53393087
Alignment:
Q  38 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagcc 137  Q
    ||||||||||| | |||||| |||||||||||| |||||||||||||||||| ||||| ||||||||||| ||||||||||||| |||| || |||| ||    
T  53393333 taagtggttcggacaaaaccgatgaaaccgaaaatccaaaccgaaccaaaccaaaaaagtatccgaccttgtttggttcggtttaaaactgaaccgaacc 53393234  T
Q  138 aatcgaaaccgatctagtttggtttggttcatggttt-taatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactccttattttact 236  Q
    || | ||||||||||||||||||| |||||  ||||| ||| || || ||||    |||||||||||| | |||| | ||||| ||||    |||||| |    
T  53393233 aacctaaaccgatctagtttggttcggttctcggtttataactttgaaatccaatgaaccgatgaaccgaaccgatgctaacctcactttccattttagt 53393134  T
Q  237 aatattatcctacctcacacaaacttatggttaagcccaaaattaaa 283  Q
    ||||||||||  | ||||||| |||| || |||||| ||||||||||    
T  53393133 aatattatccctcttcacacacacttctgattaagctcaaaattaaa 53393087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 39839153 - 39839064
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggt 119  Q
    ||||||| ||||||||||| |  ||||| |||||||||||| |||||||| || ||||| |||||| |||  |||||| |||||||||||    
T  39839153 taggggtgtaagtggttcggacgaaaccgatgaaaccgaaaatccaaaccaaatcaaactgaaaaagtatttgaccttgtttggttcggt 39839064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 257
Target Start/End: Original strand, 8056760 - 8056939
Alignment:
Q  79 cgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaacc-gatccgagccaatcgaaaccgatctagtttggtttggttcatggttttaa 177  Q
    ||||||||||||| || ||||| |||||| | ||||||| ||| ||| | ||  | | |||||| ||||||| || |||||||| |||||  | |||| |    
T  8056760 cgaaccaaaccgagaatatatctgaccttttctggttcgcttttaaaactgaaacaaaccaatctaaaccgaacttgtttggttcggttctcgattttca 8056859  T
Q  178 tttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactccttattttactaatattatcctacctcacaca 257  Q
    ||| || ||||  |||||||||||||  | ||||   ||||| ||||||  ||||||||||||||||||| |||||||||    
T  8056860 ttttgagatccaagaaaccgatgaactgaaccgatcctaaccccactccccattttactaatattatccttcctcacaca 8056939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 167
Target Start/End: Complemental strand, 8606315 - 8606181
Alignment:
Q  33 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatcc 132  Q
    |||| ||||||||||| | |||||| | ||||| || |||| |||   ||||||||||||||| ||||| || || ||||| ||||||  ||||| |  |    
T  8606315 gggtgtaagtggttcggacaaaaccgacgaaactgatagtcaaaattaaaccaaaccgaaaaagtatccaactttgtttggctcggttcaaaaccaaatc 8606216  T
Q  133 gagccaatcgaaaccgatctagtttggtttggttc 167  Q
    || |||||| |||||||||| | |||||| |||||    
T  8606215 gaaccaatctaaaccgatcttggttggttcggttc 8606181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 283
Target Start/End: Complemental strand, 19682091 - 19682001
Alignment:
Q  193 aaccgatgaaccaatccgaagataaccacactccttattttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaa 283  Q
    |||||||||||||| |||| | ||||| |||| || |||||| |||||||||||   |||||| | ||||| | |||||| ||||||||||    
T  19682091 aaccgatgaaccaaaccgatgctaacctcacttctcattttagtaatattatcccttctcacatacacttacgattaagctcaaaattaaa 19682001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 42141300 - 42141393
Alignment:
Q  83 ccaaaccgaaaaaa-tatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtttggttcatggtttt 175  Q
    |||||||||||||| ||| ||||||| ||||||||||||  ||||||| | || | || | ||| ||||||| ||||||| ||||| |||||||    
T  42141300 ccaaaccgaaaaaaatattcgaccttctttggttcggttcaaaaccgaactgaacaaacctaaatcgatctactttggttcggttcttggtttt 42141393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 6e-96; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 33 - 305
Target Start/End: Original strand, 19947711 - 19947984
Alignment:
Q  33 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatcc 132  Q
    |||| ||||||||||| | |||| ||| ||| |||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||    
T  19947711 gggtgtaagtggttcggacaaaatcaacgaatccgaaagtccaaaccgaaccaaaccgaaaaaatatccgacattgtttggttcagtttgaaaccgatcc 19947810  T
Q  133 gagccaatcgaaaccgatctagtttggtttggttcatggtttta-atttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactccttatt 231  Q
     | ||||||||| | |||||| |||| ||||||||||||||||  ||||| | ||||||||||||||||||||||||||| |||||||||||||||||||    
T  19947811 aaaccaatcgaatctgatctactttgatttggttcatggtttttcatttcaagatccgtgaaaccgatgaaccaatccgatgataaccacactccttatt 19947910  T
Q  232 ttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaacataaaatattttttaatccat 305  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||    
T  19947911 ttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataagatactttttaatccat 19947984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 30 - 321
Target Start/End: Original strand, 31895896 - 31896181
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    ||||||| ||||||||||| | ||||||||  ||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31895896 taggggtgtaagtggttcggacaaaaccaacaaaatcgaaagtccaaactgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccga 31895995  T
Q  130 tccgagccaatcgaaaccgatctagtttggtttggttcatg-gttttaatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactcctt 228  Q
    || || |||||| ||||||||||||||||||||||||||||  |||| ||||||  |||||||||||||||             ||||||||||||||||    
T  31895996 tctgaaccaatccaaaccgatctagtttggtttggttcatgattttttatttcgtgatccgtgaaaccgat-------------gataaccacactcctt 31896082  T
Q  229 attttactaatattatcctacctcacacaaacttatggttaagcccaaaatta------aacataaaatattttttaatccattcactttctctcatct 321  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||      ||||||||||||||| ||||||||||||||||||||||||    
T  31896083 attttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaagtccaacataaaatattttataatccattcactttctctcatct 31896181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 89 - 279
Target Start/End: Complemental strand, 16746548 - 16746357
Alignment:
Q  89 cgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtttggttcatggtttta-atttcgatatc 187  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||  ||||||| |||    
T  16746548 cgaaaaaatatccaaccttgtttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatc 16746449  T
Q  188 cgtgaaaccgatgaaccaatccgaagataaccacactccttattttactaatattatcctacctcacacaaacttatggttaagcccaaaat 279  Q
    ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16746448 cgtgaaatcgatgaaccaatccgatgataacctcactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaat 16746357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 16746727 - 16746550
Alignment:
Q  29 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccg 128  Q
    |||||| | ||||||||||| | |||||||| ||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||    
T  16746727 atagggatgtaagtggttcggacaaaaccaacgaaaccgaaagtctaaaccgaaccaaatcgaaaaaatatccaaccttgtttggttcggtttgaaaccg 16746628  T
Q  129 atccgagccaatcgaaaccgatctagtttggtttggttcatgg-ttttaatttcgatatccgtgaaaccgatgaacca 205  Q
    |||| | |||||||||||||||||||||||||||| ||||||| |||| ||||||| |||||||||| ||||||||||    
T  16746627 atccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaacca 16746550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 52 - 280
Target Start/End: Complemental strand, 1498358 - 1498129
Alignment:
Q  52 aaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatc 151  Q
    |||||| |||||||||||| ||||||||||| ||||| || ||||||||||||||| ||||||||||||  ||||||| | || |||| | ||||||||     
T  1498358 aaaaccgatgaaaccgaaaatccaaaccgaatcaaactgagaaaatatccgaccttgtttggttcggttcaaaaccgaactgaaccaacctaaaccgatg 1498259  T
Q  152 tagtttggtttggttcatggt-tttaatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactccttattttactaatattatcctacc 250  Q
    |||||  |||||||||   || ||| |||| || ||||   ||||||||||||| | |||| | ||||   |||||  |||||| |||||||||||   |    
T  1498258 tagttaagtttggttctcagtattttattttgagatccaataaaccgatgaaccgaaccgatgctaacatgactccccattttagtaatattatcccttc 1498159  T
Q  251 tcacacaaacttatggttaagcccaaaatt 280  Q
    || |||| ||||||| |||||| |||||||    
T  1498158 tcgcacacacttatgattaagctcaaaatt 1498129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 29126091 - 29126220
Alignment:
Q  38 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagcc 137  Q
    ||||||||||| | |||||||| ||||  || | |  ||||||||||||||||||||| |||||||  || ||||| || |||||||||||| |  | ||    
T  29126091 taagtggttcggacaaaaccaacgaaatggagaatttaaaccgaaccaaaccgaaaaagtatccgattttgtttgggtcagtttgaaaccgaactaaacc 29126190  T
Q  138 aatcgaaaccgatctagtttggtttggttc 167  Q
    || | |||||| |||||||| |||||||||    
T  29126191 aacctaaaccggtctagtttagtttggttc 29126220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 7239441 - 7239378
Alignment:
Q  59 atgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttg 122  Q
    |||||||| ||| | |||| |||||||||| |||||| |||||||||||||| |||| ||||||    
T  7239441 atgaaaccaaaaattcaaaacgaaccaaactgaaaaagtatccgaccttattaggtttggtttg 7239378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 7244617 - 7244554
Alignment:
Q  59 atgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttg 122  Q
    |||||||| ||| | |||| |||||||||| |||||| |||||||||||||| |||| ||||||    
T  7244617 atgaaaccaaaaattcaaaacgaaccaaactgaaaaagtatccgaccttattaggtttggtttg 7244554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 368
Target Start/End: Complemental strand, 16746282 - 16746243
Alignment:
Q  329 gaaaccctagccgtcaaacacaccaaacccattgttcatc 368  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  16746282 gaaactctagccgtcaaccacaccaaacccattgttcatc 16746243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 368
Target Start/End: Original strand, 31896214 - 31896253
Alignment:
Q  329 gaaaccctagccgtcaaacacaccaaacccattgttcatc 368  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  31896214 gaaaccatagccgtcaaccacaccaaacccattgttcatc 31896253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 41092163 - 41092125
Alignment:
Q  40 agtggttcgaataaaaccaatgaaaccgaaagtccaaac 78  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  41092163 agtggttcgaacaaaaccaatgaaaccgaaagtcaaaac 41092125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 30126283 - 30126223
Alignment:
Q  61 gaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggttt 121  Q
    |||| ||||| ||||||||||| |||||  ||||||||| ||||||| |||||||| ||||    
T  30126283 gaaatcgaaactccaaaccgaatcaaacaaaaaaaatattcgaccttgtttggttctgttt 30126223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 29 - 321
Target Start/End: Complemental strand, 767 - 468
Alignment:
Q  29 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccg 128  Q
    |||||||| ||||||||||  |  ||||||| |||||||| ||||||||||  ||||||| ||||||||||| || ||| ||||||||||||||||||||    
T  767 ataggggtgtaagtggttcagactaaaccaacgaaaccgatagtccaaaccagaccaaactgaaaaaatatctgatcttgtttggttcggtttgaaaccg 668  T
Q  129 atccgagccaatcgaaaccgatctagtttggtttggttcatggtttta-atttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactcct 227  Q
    |||||| ||||| ||||||||||||||||| ||||||||||||||||  |||| || ||||||||||||||||||||||||||| |||||||||||||||    
T  667 atccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatgataaccacactcct 568  T
Q  228 tattttactaatattatcctacctcacacaaacttatggttaagcccaaaatta------aacataaaatattttttaatccattcactttctctcatct 321  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||      ||||||||||| ||||||||||||||||||||||||||||    
T  567 tattttactaatattatcctacctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatactttttaatccattcactttctctcatct 468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 30 - 321
Target Start/End: Complemental strand, 44223503 - 44223220
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    ||||||| ||||||||||| | |||||||| ||||||||||||||||||||||          |||||||  || ||| |||||||| |||| |||||||    
T  44223503 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaa----------aaaatatatgatcttgtttggttcagtttaaaaccga 44223414  T
Q  130 tccgagccaatcgaaaccgatctagtttggtttggttcatggtttta-atttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactcctt 228  Q
    || || |||||||||||| |||||||||||||||||||||| ||||  ||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  44223413 tctgaaccaatcgaaaccaatctagtttggtttggttcatgatttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcctt 44223314  T
Q  229 attttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaacataaaata-ttttttaatccattcactttctctcatct 321  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44223313 attttacaaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatacttttttaatccattcactttctctcatct 44223220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 30 - 319
Target Start/End: Complemental strand, 7956516 - 7956236
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    ||||||| ||||||||||| | |||||||| ||||||||||||||||||||||          ||||||| |||||||  || ||| |||||||||||||    
T  7956516 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaa----------aaaatattcgaccttgctttgtttggtttgaaaccga 7956427  T
Q  130 tccgagccaatcgaaaccgatctagtttggtttggttcatggtttta-atttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactcctt 228  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||  |||| || ||  ||||||||||||||||||||||| |||||||| |||||||    
T  7956426 ttcgaaccaatcgaaaccgatctagtttggtttggttcatggtttttcattttgagatatgtgaaaccgatgaaccaatccgatgataaccatactcctt 7956327  T
Q  229 attttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaacataaaatattttttaatccattcactttctctcat 319  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  7956326 attttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaatacattctctttctctcat 7956236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 30 - 305
Target Start/End: Original strand, 35948827 - 35949101
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    ||||||| |||||| |||| | |||||||| |||| ||||||||||||  |||||||| | |||||||||||||| || |||||||||||||||||||||    
T  35948827 taggggtgtaagtgtttcggacaaaaccaacgaaaacgaaagtccaaattgaaccaaaacaaaaaaatatccgactttgtttggttcggtttgaaaccga 35948926  T
Q  130 tccgagccaatcgaaaccgatctagtttggtttggttcatgg-ttttaatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactcctt 228  Q
    |||||  || || ||| ||||||||||||||||| ||||||| |||| ||||||| |||| |||||||||||||||||||||| |||||| ||| |||||    
T  35948927 tccgaatcattcaaaatcgatctagtttggtttgattcatggtttttcatttcgagatccatgaaaccgatgaaccaatccgatgataacaacattcctt 35949026  T
Q  229 attttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaacataaaatattttttaatccat 305  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  35949027 attttactaatattatcctacct--cacaaacttatggttaggcccaaaattaaacataaaatactttttaatccat 35949101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 17722608 - 17722330
Alignment:
Q  18 atcaacgagagataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcg 117  Q
    ||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| |          ||||||||| ||||| |||||||||    
T  17722608 atcaacgagagataggggtgtaaatggttcggataaaaccaatgaaaccgaaagtccaaaccgga----------aaaatatccaaccttgtttggttcg 17722519  T
Q  118 gtttgaaaccgatccgagccaatcgaaaccgatctagtttggtttggttcatg-gttttaatttcgatatccgtgaaaccgatgaaccaatccgaagata 216  Q
    |||||||||| |||||| | |||||||||||||||||||||||||||||||||  |||| ||||||| ||| ||||||||||||||||||||||| ||||    
T  17722518 gtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgatttttcatttcgagatctgtgaaaccgatgaaccaatccgatgata 17722419  T
Q  217 accacactccttattttactaatatta--------tcctacctcacacaaacttatggttaagcccaaaattaaacataaaatattttt 297  Q
    ||||||||| ||| |||||||||||||        |||||||||||||| ||| ||||||| |||||||||||||||||||||| ||||    
T  17722418 accacactcattactttactaatattatcataaattcctacctcacacatactcatggttaggcccaaaattaaacataaaataatttt 17722330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 9505015 - 9505244
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccg-aaaaaatatccgaccttatttggttcggtttgaaaccg 128  Q
    ||||||| ||||||||| | |||||||| |||||||||||| |||||||| ||||||| || ||||||||||| ||||| ||||||||| ||  ||| ||    
T  9505015 taggggtgtaagtggtttggataaaaccgatgaaaccgaaaatccaaacctaaccaaaacgaaaaaaatatccaaccttgtttggttcgattcaaaatcg 9505114  T
Q  129 atccgagccaatcgaaaccgatctagtttggtttggttc-atggttttaatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactcct 227  Q
    | |||| |||| | |||||||| |||||||||| ||||| | | ||||||||| || ||||   |||||||| |||| | |||| |  |||| ||||||     
T  9505115 aaccgaaccaaccaaaaccgatatagtttggttcggttctaggattttaattttgaaatccaacaaaccgataaaccgaaccgatgccaacctcactccc 9505214  T
Q  228 tattttactaatattatcctacctcacaca 257  Q
     |||||| |||||||||||| |||||||||    
T  9505215 cattttagtaatattatccttcctcacaca 9505244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 83 - 283
Target Start/End: Complemental strand, 3767789 - 3767589
Alignment:
Q  83 ccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtttggttcatgg-ttttaatttc 181  Q
    ||||||||||||| ||||||||||| ||| ||||||||  ||||||| |||| |||||| |||||||||||||||||||||||||  || |||| ||||     
T  3767789 ccaaaccgaaaaagtatccgaccttgtttagttcggttcaaaaccgaaccgaaccaatctaaaccgatctagtttggtttggttctcggttttttatttt 3767690  T
Q  182 gatatccgtgaaaccgatgaaccaatccgaagataaccacactccttattttactaatattatcctacctcacacaaacttatggttaagcccaaaatta 281  Q
    || ||||    |||||||||||| | |||| | ||||| ||||||  |||||| |||||||||||   |||||||| || |||| |||| | ||||||||    
T  3767689 gagatccaatgaaccgatgaaccgaaccgatgctaacctcactccccattttagtaatattatcccttctcacacacac-tatgattaaactcaaaatta 3767591  T
Q  282 aa 283  Q
    ||    
T  3767590 aa 3767589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 283
Target Start/End: Complemental strand, 16571047 - 16570794
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    ||||||| ||| ||||| | | |||||| |||||| | ||| | |||||||||||||||| ||||||||||| ||||| ||||||| ||||  |||||||    
T  16571047 taggggtgtaattggtttggacaaaaccgatgaaatcaaaaattcaaaccgaaccaaacc-aaaaaatatccaaccttgtttggtttggttcaaaaccga 16570949  T
Q  130 tccgagccaatcgaaaccgatctagtttggtttggttcatg-gttttaatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactcctt 228  Q
     || | |||| | ||||||||||| ||||||| |||||  |  ||||||||| || ||||    |||||||||||  | |||| | ||||  ||||||      
T  16570948 accaaaccaacctaaaccgatctaatttggttaggttctcgatttttaattttgagatccaaagaaccgatgaactgaaccgatgctaacttcactcccc 16570849  T
Q  229 attttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaa 283  Q
    |||||| || ||||||||  ||||||||| | ||||| |||| | ||||||||||    
T  16570848 attttagtattattatccctcctcacacacatttatgattaaactcaaaattaaa 16570794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 167
Target Start/End: Original strand, 32321799 - 32321936
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    |||||||  |||||||||| |||||||  ||||||||||||  | ||||| || |||||||||||| ||| ||||||| ||||||||||||| ||| | |    
T  32321799 taggggtgcaagtggttcggataaaactgatgaaaccgaaaacctaaaccaaatcaaaccgaaaaagtattcgaccttgtttggttcggtttaaaaacaa 32321898  T
Q  130 tccgagccaatcgaaaccgatctagtttggtttggttc 167  Q
     ||||  |||   ||||||||||| ||||||| |||||    
T  32321899 accgaatcaacataaaccgatctaatttggttcggttc 32321936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 34760975 - 34760847
Alignment:
Q  38 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagcc 137  Q
    |||| |||||||| |||||| |||||||||||| ||||||||||         ||||| |||| || ||| ||||||||||||  ||| ||| |||| ||    
T  34760975 taagcggttcgaacaaaaccgatgaaaccgaaaatccaaaccga---------aaaaagtatctgatcttgtttggttcggttcaaaatcgaaccgaacc 34760885  T
Q  138 aatcgaaaccgatctagtttggtttggttcatggtttt 175  Q
    || | ||||||||||||||||||||||||| |||||||    
T  34760884 aacctaaaccgatctagtttggtttggttcttggtttt 34760847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 9040427 - 9040479
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaa 82  Q
    ||||||| |||| |||||| |||||||| |||||| |||||||||||||||||    
T  9040427 taggggtataagcggttcggataaaaccgatgaaatcgaaagtccaaaccgaa 9040479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 8266063 - 8266099
Alignment:
Q  79 cgaaccaaaccgaaaaaatatccgaccttatttggtt 115  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  8266063 cgaaccaaaccgaaaaagtatccaaccttatttggtt 8266099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 30 - 321
Target Start/End: Original strand, 31111413 - 31111705
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    ||||||| |||||||||   | |||| ||| |||||||||| ||||||  |||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  31111413 taggggtgtaagtggtttagacaaaatcaacgaaaccgaaaatccaaattgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaactga 31111512  T
Q  130 tccgagccaatcgaaaccgatctagtttggtttggttcatggtttta-atttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactcctt 228  Q
    || || ||||| ||||||||||||||||||||||||||||||||||  |||| || |||| |||||||||| |||||||| |  |||||||||||| |||    
T  31111513 tctgaaccaattgaaaccgatctagtttggtttggttcatggtttttcattttgagatccttgaaaccgataaaccaatctggtgataaccacacttctt 31111612  T
Q  229 attttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaacataaaatattttttaatccattcactttctctcatct 321  Q
    ||||||||||||||||||||||||||||||| ||||||||| || |||||||||| |||||||| |||||||| |||||||||||||||||||    
T  31111613 attttactaatattatcctacctcacacaaaattatggttaggcgcaaaattaaatataaaatactttttaattcattcactttctctcatct 31111705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 32 - 321
Target Start/End: Complemental strand, 13852453 - 13852163
Alignment:
Q  32 ggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatc 131  Q
    ||||| ||||| ||||| | |||||||| |||| ||||||||||||  ||| |||| | |||||||||| ||| || |||| ||||||||||||||||||    
T  13852453 ggggtgtaagtagttcggacaaaaccaacgaaatcgaaagtccaaattgaatcaaatcaaaaaaatatctgactttgtttgattcggtttgaaaccgatc 13852354  T
Q  132 cgagccaatcgaaaccgatctagtttggtttggttcatggtttta-atttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactccttat 230  Q
    | | |||||| ||||||||||||||||||||||||||| |||||  |||| || |||||||||||||||||||||||| |  ||||||||||||||||||    
T  13852353 caaaccaatcaaaaccgatctagtttggtttggttcatagtttttcattttgagatccgtgaaaccgatgaaccaatctgttgataaccacactccttat 13852254  T
Q  231 tttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaacataaaatattttttaatccattcactttctctcatct 321  Q
    |||| |||||||||| ||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13852253 tttattaatattatcttacctcacacaaacttaaggttatgaccaaaattaaacataaaatattttttaatccattcactttctctcatct 13852163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 83 - 283
Target Start/End: Original strand, 4638207 - 4638417
Alignment:
Q  83 ccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtttggttcatgg-ttttaatttc 181  Q
    ||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||| | || ||| |||||||||||||||||||| |||| ||||     
T  4638207 ccaaaccgaaaaaatatccgaccttgttcggttcggtttgaaatcgatccgaaccaatcaatactgatttagtttggtttggttcatggtttttcatttt 4638306  T
Q  182 gatatccgtgaaaccgatgaaccaatccgaagataaccacactcctta----ttttactaatattatcctac-----ctcacacaaacttatggttaagc 272  Q
    || ||||||||||||||||||||||||||| |||||||||||||||||    |||||||||||||||||| |     |||||||||| |||||||||  |    
T  4638307 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttaattcttttactaatattatcctcctcacactcacacaaaattatggttagac 4638406  T
Q  273 ccaaaattaaa 283  Q
    |||||||||||    
T  4638407 ccaaaattaaa 4638417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 149 - 321
Target Start/End: Original strand, 36009278 - 36009459
Alignment:
Q  149 atctagtttggtttggttcatggtttta-atttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactccttattttactaatattatc-- 245  Q
    |||||||||||||||||||||||||||  ||||||| |||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||      
T  36009278 atctagtttggtttggttcatggtttttcatttcgagatccatgaaaccgatgaatcaatccgatgataaccacactccttattttactaatattatcct 36009377  T
Q  246 ------ctacctcacacaaacttatggttaagcccaaaattaaacataaaatattttttaatccattcactttctctcatct 321  Q
          |||||| ||||||| | ||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36009378 acatttctaccttacacaaattcatggttaggtccaaaattaaacataaaataatttttaatccattcactttctctcatct 36009459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 283
Target Start/End: Complemental strand, 29109348 - 29109094
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    ||||||| ||||||||||| | |||||  ||||||| |||| ||||||||||||||||| |||||| ||||||||||| |||||||| |||  |||||||    
T  29109348 taggggtgtaagtggttcggacaaaactgatgaaactgaaaatccaaaccgaaccaaactgaaaaattatccgaccttgtttggttcagttcaaaaccga 29109249  T
Q  130 tccgagccaatcgaaaccgatctagtttggtttggttcatgg-ttttaatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactcctt 228  Q
     ||||  ||| | ||||| |||||||||||||||||||  || ||||||||| || ||||    ||||||||||||||  ||| | |||||   || |      
T  29109248 accgaagcaacctaaaccaatctagtttggtttggttctcggtttttaattttgagatccaaagaaccgatgaaccaaatcgatgctaaccttccttccc 29109149  T
Q  229 attttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaa 283  Q
    |||||| |||||||||||  ||||||||| | ||||  |||||| ||||||||||    
T  29109148 attttagtaatattatcccccctcacacacaattataattaagctcaaaattaaa 29109094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 83 - 320
Target Start/End: Original strand, 38607020 - 38607266
Alignment:
Q  83 ccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtttggttcatggtttta-atttc 181  Q
    |||||||||||| |||||||||||| |||| |||| ||  ||||||| |||| |||||| |||| || || |||||||| ||||| |||||||  ||||     
T  38607020 ccaaaccgaaaatatatccgaccttgtttg-ttcgattcaaaaccgaaccgaaccaatctaaactgaccttgtttggttcggttcttggtttttcatttt 38607118  T
Q  182 gatatccgtgaaaccgatgaaccaatccgaagataaccacactccttattttactaatattatcctacctcacac----aaacttatggttaagcccaaa 277  Q
    || |||| | ||||||||||||| ||  || | |||||||||||   ||||||||||| ||||||  ||||||||    | ||||||| ||| |||||||    
T  38607119 gagatccataaaaccgatgaaccgatttgatgctaaccacactcgccattttactaatgttatccctcctcacacgcaaacacttatgattaggcccaaa 38607218  T
Q  278 attaa-----acataaaatattttttaatccattcactttctctcatc 320  Q
    |||||     |||||||||| | ||||||||||||| ||| |||||||    
T  38607219 attaagtccaacataaaatactatttaatccattcattttatctcatc 38607266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 3920029 - 3919904
Alignment:
Q  42 tggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatc 141  Q
    ||||| ||| ||||||||||||||| ||| | ||||| ||| ||||||||||||  || |||| || ||||||| ||||  ||||||| |||| |||| |    
T  3920029 tggttggaacaaaaccaatgaaacctaaaattcaaactgaatcaaaccgaaaaagcattcgactttgtttggtttggttcaaaaccgaaccgaaccaaac 3919930  T
Q  142 gaaaccgatctagtttggtttggttc 167  Q
     |||||||||||||||||||||||||    
T  3919929 taaaccgatctagtttggtttggttc 3919904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 12894099 - 12893980
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    ||||||| | ||||||||  | |||||||| |||| | ||||||||||| |||||||||| ||||  ||||||||||| ||||||||||||  ||||  |    
T  12894099 taggggtgtgagtggttcagacaaaaccaacgaaatcaaaagtccaaactgaaccaaaccaaaaatgtatccgaccttgtttggttcggttcaaaacaaa 12894000  T
Q  130 tccgagccaatcgaaaccga 149  Q
     |||| |||||| |||||||    
T  12893999 accgaaccaatctaaaccga 12893980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 283
Target Start/End: Original strand, 5526225 - 5526470
Alignment:
Q  38 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagcc 137  Q
    |||||||| || | |||||||| |||| ||||| ||||||   ||||||||||||||  ||||||||||| ||| ||||||||  |||| ||  ||| ||    
T  5526225 taagtggtccggacaaaaccaaagaaatcgaaaatccaaattaaaccaaaccgaaaacgtatccgaccttgttttgttcggttcaaaactga-acgaacc 5526323  T
Q  138 aatcgaaaccgatctagtttggtttggttc-atggttttaatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactccttattttact 236  Q
    || | ||||||||||||||||||| |||||   | ||||||||| || ||||    ||| |||||||| | |||| | ||| | ||||||  |||||| |    
T  5526324 aacctaaaccgatctagtttggttcggttctcagtttttaattttgagatccaaagaacagatgaaccgaaccgatgctaatctcactccccattttagt 5526423  T
Q  237 aatattatcctacctcacacaaacttatggttaagcccaaaattaaa 283  Q
    | ||||||||  ||| ||||| ||||||| |||| | ||||||||||    
T  5526424 attattatccctccttacacacacttatgattaaactcaaaattaaa 5526470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 368
Target Start/End: Original strand, 4638506 - 4638545
Alignment:
Q  329 gaaaccctagccgtcaaacacaccaaacccattgttcatc 368  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  4638506 gaaaccctatccgtcaaccacaccaaacccattgttcatc 4638545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 30907029 - 30906942
Alignment:
Q  29 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttc 116  Q
    |||||||| ||||||||| | | |||| | |||||||||||| |||| || |||||||||| ||||| | | ||||||| ||||||||    
T  30907029 ataggggtgtaagtggtttggacaaaatcgatgaaaccgaaaatccagactgaaccaaaccaaaaaagttttcgaccttgtttggttc 30906942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 37630375 - 37630461
Alignment:
Q  75 aaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtt 161  Q
    ||||||||||||||||||||| ||||  |||||  |||||| ||||  ||| |||||| | |||| | |||| ||||||||||||||    
T  37630375 aaaccgaaccaaaccgaaaaagtatcgaaccttgcttggtttggttcaaaatcgatccaaaccaacctaaactgatctagtttggtt 37630461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 36009229 - 36009270
Alignment:
Q  90 gaaaaaatatccgaccttatttggttcggtttgaaaccgatc 131  Q
    |||||||||||||| ||| ||| |||||||||||||||||||    
T  36009229 gaaaaaatatccgatcttgtttagttcggtttgaaaccgatc 36009270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 35954886 - 35954794
Alignment:
Q  75 aaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtttggttc 167  Q
    |||||||| |||| ||||||| ||||||||||| ||| ||| ||||| ||| ||| | || |||| | ||  ||||||| |||||||||||||    
T  35954886 aaaccgaatcaaatcgaaaaagtatccgaccttgttttgtttggtttaaaatcgaactgaaccaacctaactcgatctaatttggtttggttc 35954794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 8e-80; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 30 - 282
Target Start/End: Original strand, 46655514 - 46655768
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaa-tatccgaccttatttggttcggtttgaaaccg 128  Q
    |||||||  |||||||||| ||||| |||| |||| ||||| ||| |||| ||||||||| |||||| |||||||||||| |||||||||||||||||||    
T  46655514 taggggtgcaagtggttcggataaatccaacgaaatcgaaaatccgaaccaaaccaaaccaaaaaaaatatccgaccttacttggttcggtttgaaaccg 46655613  T
Q  129 atccgagccaatcgaaaccgatctagtttggtttggttcatggtttta-atttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactcct 227  Q
    |||||| |||||| ||||| |||||||||||||||||||||| ||||  ||||||| ||||||||||||||||||||||||| | |||||||||||| ||    
T  46655614 atccgaaccaatcaaaaccaatctagtttggtttggttcatgctttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacacttct 46655713  T
Q  228 tattttactaatattatcctacctcacacaaacttatggttaagcccaaaattaa 282  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  46655714 tattttactaatattatcctacctcacacaaatttatggttaggcccaaaattaa 46655768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 283
Target Start/End: Original strand, 44471020 - 44471271
Alignment:
Q  33 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatcc 132  Q
    |||| ||||||||||| | |||||| |||||| ||||| |||||||||||||||||||||||  ||||||||||| ||| ||||||||  ||||||| ||    
T  44471020 gggtgtaagtggttcggacaaaaccgatgaaatcgaaaatccaaaccgaaccaaaccgaaaatgtatccgaccttgtttagttcggttcaaaaccgaacc 44471119  T
Q  133 gagccaatcgaaaccgatctagtttggtttggttcatggtttt-aatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactccttatt 231  Q
     | |||||| ||||||||||||||||||| ||||| ||||||| ||||| || ||||    |||||||||||| | |||| | ||||   |||||  | |    
T  44471120 aaaccaatctaaaccgatctagtttggttcggttcttggtttttaattttgaaatccaaagaaccgatgaaccgaaccgatgctaacataactccccagt 44471219  T
Q  232 ttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaa 283  Q
    ||| |||||||||||  ||||| ||| ||||||| |||||| ||||||||||    
T  44471220 ttagtaatattatccctcctcaaacacacttatgattaagctcaaaattaaa 44471271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 30554726 - 30554588
Alignment:
Q  29 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccg 128  Q
    |||||||| ||| ||||||||| |||| | |||||||||||| |||||| ||| | ||||||||||| ||||||||||| ||| ||||||||  ||| ||    
T  30554726 ataggggtgtaaatggttcgaacaaaatcgatgaaaccgaaaatccaaatcgagctaaaccgaaaaagtatccgaccttgtttagttcggttcaaaatcg 30554627  T
Q  129 atccgagccaatcgaaaccgatctagtttggtttggttc 167  Q
    | |||| |||||| ||||||||||||||||||| |||||    
T  30554626 aaccgaaccaatctaaaccgatctagtttggttcggttc 30554588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 257
Target Start/End: Complemental strand, 11503513 - 11503284
Alignment:
Q  29 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccg 128  Q
    |||||||| |||| ||||   |||||||| ||||||| ||||||||||||||||||||||| ||||  ||||||||||| | ||||  ||||  ||||||    
T  11503513 ataggggtgtaagcggttaagataaaaccgatgaaactgaaagtccaaaccgaaccaaaccaaaaatgtatccgaccttgtctggtaaggttcaaaaccg 11503414  T
Q  129 atccgagccaatcgaaaccgatctagtttggtttggttcatg-gttttaatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactcct 227  Q
    | |||| |||||||||||||||||  |||||||||||||  |  |||| |||| || ||||  ||||||||| |||| | || | | ||||| ||||||     
T  11503413 aaccgaaccaatcgaaaccgatcttatttggtttggttctcgatttttcattttgagatccaagaaaccgataaaccgaacccatgctaacctcactccc 11503314  T
Q  228 tattttactaatattatcctacctcacaca 257  Q
     ||||||||| ||||||||  |||||||||    
T  11503313 cattttactattattatccctcctcacaca 11503284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 46892612 - 46892703
Alignment:
Q  38 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    |||||||||||   |||||| |||||||  ||| | |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  46892612 taagtggttcgggcaaaaccgatgaaacaaaaaattcaaaccgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttaaaaccga 46892703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 320
Target Start/End: Original strand, 26757593 - 26757892
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccga 129  Q
    ||||||| ||||||||| | | ||||||||||||| ||||| |||||| | ||| ||| ||||||| ||| |||| || |||||||  |||| |||| ||    
T  26757593 taggggtgtaagtggtttggacaaaaccaatgaaatcgaaaatccaaatcaaacaaaatcgaaaaagtattcgacgttgtttggtttagtttaaaactga 26757692  T
Q  130 tccgagccaatcgaaaccgatctagtttggtttggttcatgg-ttttaatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactcctt 228  Q
     |||| |||| | ||| |||| ||| |||||| ||||| ||| ||||||||| || ||||    || |||| |||  | ||||   ||||| |||||       
T  26757693 accgaaccaacctaaatcgatatagattggttcggttcttggattttaattttgagatccaaagaatcgataaactgaaccgatagtaacctcactctcc 26757792  T
Q  229 attttactaatattatcctac--ctcacacaaacttatggttaagcccaaaatta------aacataaaatattttttaatccattcactttctctcatc 320  Q
    |||||| |||||||||||| |  | |||||| ||||||| |||||| ||||||||      ||||||||||| |  ||||| ||||||||||||||||||    
T  26757793 attttagtaatattatccttccacacacacacacttatgattaagctcaaaattaaagttcaacataaaatactccttaattcattcactttctctcatc 26757892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 283
Target Start/End: Complemental strand, 44682129 - 44681930
Alignment:
Q  85 aaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcg-aaaccgatctagtttggtttggttcatgg-ttttaatttcg 182  Q
    ||||||||||| ||| ||||||| |||||||||| |  ||||||| | || |||| |  ||||||||||||||||||||||||| ||| ||||||||| |    
T  44682129 aaaccgaaaaagtatacgaccttgtttggttcggatcaaaaccgaactgaaccaaacctaaaccgatctagtttggtttggttcttggtttttaattttg 44682030  T
Q  183 atatccgtgaaaccgatgaaccaatccgaagataaccacactccttattttactaatattatcctacctcacacaaacttatggttaagcccaaaattaa 282  Q
    | |||||   ||||||  |||| | |||| | ||||| |||| |  | || | |||||||||||   |||||||| ||||||| |||||| |||||||||    
T  44682029 aaatccgatgaaccgacaaaccgaaccgatgctaacctcacttccca-ttgagtaatattatccgttctcacacacacttatgattaagctcaaaattaa 44681931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 167
Target Start/End: Complemental strand, 12937912 - 12937777
Alignment:
Q  32 ggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatc 131  Q
    ||||| |||||| |||| |||||| | |||||||||||| |||||||||||| ||| ||||||| |||  ||  || ||||||| | ||  ||||||| |    
T  12937912 ggggtgtaagtgattcggataaaatcgatgaaaccgaaaatccaaaccgaactaaatcgaaaaagtattagattttgtttggtttgattgaaaaccgaac 12937813  T
Q  132 cgagccaatcgaaaccgatctagtttggtttggttc 167  Q
    ||| |||| | ||||||||| | ||||||| |||||    
T  12937812 cgaaccaacctaaaccgatcaattttggttcggttc 12937777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 44285605 - 44285691
Alignment:
Q  75 aaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtt 161  Q
    ||||||||  |||||||||||||||  |||||| ||||||||||||  ||||||| |||| |||| | ||| |||| ||||||||||    
T  44285605 aaaccgaattaaaccgaaaaaatatatgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaatcgatttagtttggtt 44285691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 284
Target Start/End: Original strand, 27524053 - 27524270
Alignment:
Q  66 cgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtttggt 165  Q
    |||||||||||||  ||||||||||||||  ||| ||||||| |||||||||| |  ||||| | || | |||||| ||| ||| || |||||||| |||    
T  27524053 cgaaagtccaaactaaaccaaaccgaaaaggtattcgaccttgtttggttcggatcaaaaccaaaccaaaccaatctaaatcgaccttgtttggttcggt 27524152  T
Q  166 tc-atggttttaatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactccttattttactaatattatcctacctcacacaaacttat 264  Q
    ||  || |||||||||  | ||||  | || ||||||||| | || | | ||||| ||||||  ||||||||| |||||||   ||||||||  ||||||    
T  27524153 tctctgtttttaattttcagatccaaggaatcgatgaaccgaaccaatggtaaccccactccccattttactattattatctctcctcacac--acttat 27524250  T
Q  265 ggttaagcccaaaattaaac 284  Q
    | ||| ||||||| ||||||    
T  27524251 gattaggcccaaagttaaac 27524270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 779629 - 779539
Alignment:
Q  85 aaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtttggttcatggtttt 175  Q
    ||||||||||| ||||| ||||| ||| ||||||||  |||| ||  ||| |||| | ||||| ||||||||||||| ||||| |||||||    
T  779629 aaaccgaaaaagtatccaaccttgtttagttcggttcaaaacagaatcgaaccaacctaaaccaatctagtttggttcggttcttggtttt 779539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 90 - 320
Target Start/End: Complemental strand, 1970 - 1736
Alignment:
Q  90 gaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtttggttcatggtttt-aatttcgatatcc 188  Q
    |||||||||||||||||| ||||||||||||||||| ||||| || |||||| |||| |||||| ||||||||||||||||||||| |||||||| || |    
T  1970 gaaaaaatatccgaccttgtttggttcggtttgaaatcgatcggaaccaatcaaaactgatctactttggtttggttcatggtttttaatttcgagattc 1871  T
Q  189 gtgaaaccgatgaaccaatccgaagataaccacactccttattttactaatattatcctacctcacacaaacttatggttaagcccaaaatta------a 282  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||  ||||||||||||||| ||   |||||||      |    
T  1870 gtgaaaccgatgaaccaatccgatgataacaacactccttattttactaatattattctacct--cacaaacttatggtt-aggttaaaattaaaatcca 1774  T
Q  283 acataaaatattttttaatccattcactttctctcatc 320  Q
    |||||||||| |||||||||||||||||||||||||||    
T  1773 acataaaatactttttaatccattcactttctctcatc 1736  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 283
Target Start/End: Original strand, 9826747 - 9826991
Alignment:
Q  40 agtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgacctt-atttggttcggtttgaaaccgatccgagcca 138  Q
    ||||||||| | |||||| | |||||| ||| | ||||| |||||||||||||||  ||||||||||| |||||||||||||  ||||||| |||| |||    
T  9826747 agtggttcggagaaaaccgaagaaaccaaaaattcaaactgaaccaaaccgaaaag-tatccgacctttatttggttcggttgaaaaccgaaccgaacca 9826845  T
Q  139 atcgaaaccgatctagtttggtttggttcatgg-ttttaatttcgatatccgtgaaaccgatgaaccaatccgaagataaccacactccttattttacta 237  Q
    |   ||||||||||||||||||| | |||  || ||||||||| || ||||    |||||||||||||| | || | ||||| |||| |   ||||| ||    
T  9826846 acataaaccgatctagtttggttcgattctcggtttttaattttgaaatccaaagaaccgatgaaccaaactgatgttaacctcacttcccgttttagta 9826945  T
Q  238 atattatcctacctcacacaaacttatggttaagcccaaaattaaa 283  Q
    |||||||||  |||||||||  |||||| |||||| ||| ||||||    
T  9826946 atattatccctcctcacacacgcttatgattaagctcaatattaaa 9826991  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 167
Target Start/End: Original strand, 23301441 - 23301548
Alignment:
Q  60 tgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttgg 159  Q
    ||||||||||| | ||||| ||||||||||||||||  || ||||||| ||||||||||||  ||||||| |||| |||| | |||| ||||||||||||    
T  23301441 tgaaaccgaaaattcaaactgaaccaaaccgaaaaataattcgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaactgatctagtttgg 23301540  T
Q  160 tttggttc 167  Q
    || |||||    
T  23301541 ttcggttc 23301548  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 166
Target Start/End: Complemental strand, 7176662 - 7176529
Alignment:
Q  33 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatcc 132  Q
    |||| |||||| |||| | |||||| ||||||||||||   | ||||||||||| |||||||| ||||| ||||| ||||||| ||||  ||| ||| ||    
T  7176662 gggtgtaagtgtttcggacaaaaccgatgaaaccgaaaactctaaccgaaccaacccgaaaaagtatccaaccttgtttggtttggttcaaaatcgaacc 7176563  T
Q  133 gagccaatcgaaaccgatctagtttggtttggtt 166  Q
    || |||| | ||||||||||||||||||| ||||    
T  7176562 gaaccaacctaaaccgatctagtttggttcggtt 7176529  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 283
Target Start/End: Original strand, 11846307 - 11846494
Alignment:
Q  97 tatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtttggttcatggtttt-aatttcgatatccgtgaaac 195  Q
    ||||||||||| ||||||| ||||  ||||||| | || ||||   ||||||||||||||||||| |||||  |||||| ||||| || ||||    |||    
T  11846307 tatccgaccttgtttggtttggttcaaaaccgaactgaaccaacttaaaccgatctagtttggttcggttctcggtttttaattttgagatccaatgaac 11846406  T
Q  196 cgatgaaccaatccgaagataaccacactccttattttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaa 283  Q
    | |||||||||   || | || || ||||||  |||||| |||||||||||  ||||||||| ||||||| |||||| ||||||||||    
T  11846407 caatgaaccaaattgatgctatcctcactccccattttagtaatattatccctcctcacacacacttatgattaagctcaaaattaaa 11846494  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 167
Target Start/End: Original strand, 23300455 - 23300562
Alignment:
Q  60 tgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttgg 159  Q
    ||||||||||| | ||||||||||||||||||||||  |  ||||||| ||||||||||||  |||| || |||| |||| | |||| |||||||||| |    
T  23300455 tgaaaccgaaaattcaaaccgaaccaaaccgaaaaagaaatcgaccttgtttggttcggttcaaaactgaaccgaaccaacctaaactgatctagtttag 23300554  T
Q  160 tttggttc 167  Q
    || |||||    
T  23300555 ttcggttc 23300562  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 11971456 - 11971546
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtt 120  Q
    ||||||| |||||||||   ||||||||||||||| |||||  | ||||||||| ||||||||||  ||||||| ||| ||||||||||||    
T  11971456 taggggtgtaagtggtttagataaaaccaatgaaatcgaaaacctaaaccgaactaaaccgaaaatgtatccgatcttgtttggttcggtt 11971546  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 2454287 - 2454150
Alignment:
Q  38 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagcc 137  Q
    ||||||||||| | |||||| ||||||  |||| | ||||  ||| |||||||| ||| |||||||| ||||| |||||||||  ||| ||| |||| ||    
T  2454287 taagtggttcggacaaaaccgatgaaattgaaaattcaaatggaatcaaaccgagaaagtatccgactttattaggttcggttcaaaatcgaaccgaacc 2454188  T
Q  138 aatcgaaaccgatctagtttggtttggttcatggtttt 175  Q
    || | |||| ||| |||||||||| | ||| |||||||    
T  2454187 aacctaaactgatatagtttggttcgattcttggtttt 2454150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 1208744 - 1208812
Alignment:
Q  215 taaccacactccttattttactaatattatcctacctcacacaaacttatggttaagcccaaaattaaa 283  Q
    ||||| |||||||| |||||||||| ||||||  | ||||||| ||||||  ||| |||||||||||||    
T  1208744 taaccccactccttgttttactaatgttatccctcttcacacacacttatcattaggcccaaaattaaa 1208812  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 32613977 - 32613901
Alignment:
Q  85 aaaccgaaaaaatatccgaccttatttggttcggtttgaaaccgatccgagccaatcgaaaccgatctagtttggtt 161  Q
    ||||||||||| |||| ||| || ||||| | ||||  ||||||| |||| |||| | |||||||||||||||||||    
T  32613977 aaaccgaaaaagtatctgactttgtttggcttggttcaaaaccgaaccgaaccaacctaaaccgatctagtttggtt 32613901  T

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Target: scaffold0070 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 33729 - 33819
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgaccttatttggttcggtt 120  Q
    ||||||| ||||||||||| |||||||||||||||| |||||||||||  |||||||||||||||  |||| |||||| | ||||| ||||    
T  33729 taggggtgtaagtggttcggataaaaccaatgaaactgaaagtccaaattgaaccaaaccgaaaatgtatctgaccttgtctggtttggtt 33819  T

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Target: scaffold0564 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 167
Target Start/End: Original strand, 6311 - 6452
Alignment:
Q  30 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccgacct---ta-tttggttcggtttgaaa 125  Q
    ||||||| |||||| |||| | |||||| || |||  |||| ||||||| |||| ||||||||||| ||||||||||   || ||||||||||||| |||    
T  6311 taggggtataagtgattcggacaaaaccgataaaattgaaaatccaaactgaactaaaccgaaaaagtatccgacctagctagtttggttcggtttaaaa 6410  T
Q  126 ccgatccgagccaatcgaaaccgatctagtttggtttggttc 167  Q
      ||  ||| |||| | |||||||||||||||| | ||||||    
T  6411 ttgaatcgaaccaacctaaaccgatctagtttgatctggttc 6452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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