View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_6 (Length: 630)
Name: NF7721_low_6
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 598; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 15 - 616
Target Start/End: Original strand, 39609598 - 39610199
Alignment:
| Q |
15 |
aattttgacaataaactcttatctgtagggccaaatttctagggaatccttaatgcagttaacgttggtcgaacaactccgggagagacaggaaatggag |
114 |
Q |
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| T |
39609598 |
aattttgacaataaactcttatctgtagggccaaatttctagggaatccttgatgcagttaacgttggtcgaacaactccgggagagacaggaaatggag |
39609697 |
T |
|
| Q |
115 |
aagaagcttcagaaattggccaaaaccatggatcatttggaaagagcaaagagagaagaggctgctccgctaattgaagctgcatatcaacatggattag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39609698 |
aagaagcttcagaaattggccaaaaccatggatcatttggaaagagcaaagagagaagaggctgctccgctaattgaagctgcatatcaacatggattag |
39609797 |
T |
|
| Q |
215 |
tggaagagaggattctttatgagcgtgagcaacaagtatgtctacttgtgttccctcggaaacaattcaatttttgtacaattttcctctcatgttggaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39609798 |
tggaagagaggattctttatgagcgtgagcaacaagtatgtctacttgtgttccctcggaaacaattcaatttttgtacaattttcctctcatgttggaa |
39609897 |
T |
|
| Q |
315 |
caaaatcttctttttgtcgtattctatttaaaaaagggttttcttgtactaactgtgtgagaccatggtttgatgcagcaagaggttgaactaagcagac |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39609898 |
caaaatcttctttttgtcgtattctatttaaaaaagggttttcttgtactaactgtgtgagaccatggtttgatgcagcaagaggttgaactaagcagac |
39609997 |
T |
|
| Q |
415 |
agcgccatgctgcagatctcattgagaaggagaggcttagtcgaatgatgggctgtaaagttagtatcataaactcttaagctgctcttctatatcttga |
514 |
Q |
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| T |
39609998 |
agcgccatgctgcagatctcattgagaaggagaggcttagtcgaatgatgggctgtaaagttagtatcataaactcttaagctgctcttctatatcttga |
39610097 |
T |
|
| Q |
515 |
ccaattcgataaatgacaaccttttaacaattgatgtaaattgtcatcctataagacaaatacaaaataccatttattaaatttacctagtatgtctgat |
614 |
Q |
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| T |
39610098 |
ccaattcgataaatgacaaccttttaacaattgatgtaaattgtcatcctataagacaaatacaaaataccatttattaaatttacctagtatgtctgat |
39610197 |
T |
|
| Q |
615 |
gt |
616 |
Q |
| |
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|| |
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| T |
39610198 |
gt |
39610199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 34 - 513
Target Start/End: Complemental strand, 40160042 - 40159563
Alignment:
| Q |
34 |
tatctgtagggccaaatttctagggaatccttaatgcagttaacgttggtcgaacaactccgggagagacaggaaatggagaagaagcttcagaaattgg |
133 |
Q |
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| T |
40160042 |
tatctgtagggccaaatttctagggaatccttgatgcagttgacgttggtcgaacaagtccgggagagacaggaaatggagaagaagcttcagaaattgg |
40159943 |
T |
|
| Q |
134 |
ccaaaaccatggatcatttggaaagagcaaagagagaagaggctgctccgctaattgaagctgcatatcaacatggattagtggaagagaggattcttta |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| | |
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| T |
40159942 |
ccaaaaccatggatcatttggaaagagcaaagagagaagaggctgctccgctaattgatgctgcatatcaacagcgattagtggaagagagggttcttca |
40159843 |
T |
|
| Q |
234 |
tgagcgtgagcaacaagtatgtctacttgtgttccctcggaaacaattcaatttttgtacaattttcctctcatgttggaacaaaatcttc-tttttgtc |
332 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| ||| ||||| |||| ||||||||||||| ||| |||||| | |
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| T |
40159842 |
tgagcgtgagcaacaagtatgtctacttgtgttccattggaaacaattaaatttttacacatttttc--ctcaagttggaacaaaattttcttttttgcc |
40159745 |
T |
|
| Q |
333 |
gtattctatttaaaaaagggttt-tcttgtactaactgtgtgagaccatggtttgatgcagcaagaggttgaactaagcagacagcgccatgctgcagat |
431 |
Q |
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| |||||||||||| ||| ||| ||||||||||||||| ||||||||| |||| ||||||| ||| |||||||||||||||||||||||||||| |||| |
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| T |
40159744 |
gcattctatttaaacaagcttttgtcttgtactaactgtatgagaccattgttttatgcagctagaagttgaactaagcagacagcgccatgctggagat |
40159645 |
T |
|
| Q |
432 |
ctcattgagaaggagaggcttagtcgaatgatgggctgtaaagttagtatcataaactcttaagctgctcttctatatcttg |
513 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
40159644 |
ctcaatgagaaggagaggcttagtcgaatgatgggcaataaagttagtatcataaactcttaggctactcttctatatcttg |
40159563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 99 - 265
Target Start/End: Complemental strand, 33946169 - 33946003
Alignment:
| Q |
99 |
gagacaggaaatggagaagaagcttcagaaattggccaaaaccatggatcatttggaaagagcaaagagagaagaggctgctccgctaattgaagctgca |
198 |
Q |
| |
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|||||| |||||||||||||| || | ||||| |||||||||||| |||||||||||| |||||||||||| ||||||||||||| ||||| ||| |
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| T |
33946169 |
gagacaagaaatggagaagaaactgaaaaaattaagtaaaaccatggattttttggaaagagctaagagagaagagtctgctccgctaatcgaagcggca |
33946070 |
T |
|
| Q |
199 |
tatcaacatggattagtggaagagaggattctttatgagcgtgagcaacaagtatgtctacttgtgt |
265 |
Q |
| |
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|||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33946069 |
tatcaacaacgcctagtggaagagaggattcttcatgagcgtgagcaacaagtatgtctacttgtgt |
33946003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 136 - 249
Target Start/End: Complemental strand, 18697557 - 18697444
Alignment:
| Q |
136 |
aaaaccatggatcatttggaaagagcaaagagagaagaggctgctccgctaattgaagctgcatatcaacatggattagtggaagagaggattctttatg |
235 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| | || |||||||||| || ||||| ||||||||||| | || ||||||||||||||||| | | |
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| T |
18697557 |
aaaaccattgattttttggaaagagcaaagagaggaaagtctgctccgcttatcgaagcagcatatcaacaatgcctaatggaagagaggattcttcacg |
18697458 |
T |
|
| Q |
236 |
agcgtgagcaacaa |
249 |
Q |
| |
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| |||||||||||| |
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| T |
18697457 |
accgtgagcaacaa |
18697444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 33945883 - 33945833
Alignment:
| Q |
356 |
tcttgtactaactgtgtgagaccatggtttgatgcagcaagaggttgaact |
406 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
33945883 |
tcttgtactaactgtgttagaccatggtttgatgcagcaagaggctgaact |
33945833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 31742245 - 31742208
Alignment:
| Q |
379 |
atggtttgatgcagcaagaggttgaactaagcagacag |
416 |
Q |
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|||||||||||||||||||||||||||| |||| |||| |
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| T |
31742245 |
atggtttgatgcagcaagaggttgaactgagcaaacag |
31742208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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