View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_61 (Length: 375)
Name: NF7721_low_61
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 8141084 - 8141394
Alignment:
| Q |
1 |
atatacaataaggtgcttgataatgaggaagtatttatgaaaaaattgttgcagaggaagctaaaatgggtgtgggattgtgataatttaagatctgtac |
100 |
Q |
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| T |
8141084 |
atatgcaataaagtgcttgataatgaggaagtatttatgaaaaaattgttgcagaggaagttaaaatgggtgtgggattgtgataatttaagatctgtaa |
8141183 |
T |
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| Q |
101 |
ttcgtatggtattaatattgnnnnnnnctattttataaataattttggaagaacatacatatgaatattattaaatttatgaataagtttattgtaatat |
200 |
Q |
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| T |
8141184 |
ttcgtatggtattaatattgtttttttctattttataaataattttggaagaacatacatatgaatattatcaaatttatgagtaagtttattgtaatat |
8141283 |
T |
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| Q |
201 |
taatgggaaattggatgaaggtttgggttgtacatttattgtgttgatttcgaaaagcaataaccctcaggatttgttaggtttttgtcatatttctcta |
300 |
Q |
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| T |
8141284 |
taatgggagattggatgaaggtttgggttgtacatttattgtgttgattccaaaaagcaataaccctcaggaattgttaggtttttgtcatatttctcta |
8141383 |
T |
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| Q |
301 |
gttgggcatat |
311 |
Q |
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|||||| |||| |
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| T |
8141384 |
gttgggtatat |
8141394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 8142743 - 8142793
Alignment:
| Q |
308 |
atatgtatagggtgttgtctaaggtttgtgcgaagagattgagtcgatcat |
358 |
Q |
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| T |
8142743 |
atatatatagggtgttgtctaaggtttgtgcgaagagattgagtcgatcat |
8142793 |
T |
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