View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_68 (Length: 338)
Name: NF7721_low_68
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_68 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 155 - 319
Target Start/End: Original strand, 10822580 - 10822744
Alignment:
| Q |
155 |
attatatttccacaacaacataagaatgcattattgttattgtggagatagttaatcagtagttataagaaatcataagtttaagatattacttgaatac |
254 |
Q |
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| T |
10822580 |
attatatttctacaacaacataagaatgcattattgttattgtggtgatagttaataagtagttataagaaatcataagtttaagatattacttgaatac |
10822679 |
T |
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| Q |
255 |
ttgatttataggatcaaatctattttgagaatttatctaacaataacaggagctgaagtttatac |
319 |
Q |
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| T |
10822680 |
ttgatttatacgatcaaatatattttgagaatttatctaacaataacaggagctgaagtttatac |
10822744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 10816685 - 10816996
Alignment:
| Q |
20 |
tgaattgaatcttttttgaacaatgtacaaagagtatcctattta---gcttagctaaatctaacaaactttctatcggttag---------------tt |
101 |
Q |
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| T |
10816685 |
tgaattgaatctgttttgaacaatgtacaa-gagtatcctatttataggcttagctaaatctaaccaaccttctatcggttagttagacaactcttagtt |
10816783 |
T |
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| Q |
102 |
agataactctaactaattccttaactaactaattacagagttaatcaatttctattatatttccacaacaacata------agaatgcattattgttatt |
195 |
Q |
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| T |
10816784 |
agataactctaactaatttcttaactaactaattacatagttaatcaatttctcttatatttccacaacaacataagactcagaatgtattattgttatt |
10816883 |
T |
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| Q |
196 |
gtggagatagttaatcagtagttataagaaatcataagtttaagatattacttgaatacttgatttataggatcaaatctattttgagaatttatctaac |
295 |
Q |
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| T |
10816884 |
gtggagataattaattactagttataagaaatggtaagtttaagatcgtacttgaagacttgatttataggttgaattatactttgagaattaatctaac |
10816983 |
T |
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| Q |
296 |
aataacaggagct |
308 |
Q |
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| T |
10816984 |
aataacaagagct |
10816996 |
T |
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